Orthogroup:group_396


Homologs in group_396

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15400 FBDBKF_15400 Morganella morganii S1 rbsB ribose ABC transporter substrate-binding protein RbsB
EHELCC_15760 EHELCC_15760 Morganella morganii S2 rbsB ribose ABC transporter substrate-binding protein RbsB
NLDBIP_16610 NLDBIP_16610 Morganella morganii S4 rbsB ribose ABC transporter substrate-binding protein RbsB
LHKJJB_16195 LHKJJB_16195 Morganella morganii S3 rbsB ribose ABC transporter substrate-binding protein RbsB
HKOGLL_15965 HKOGLL_15965 Morganella morganii S5 rbsB ribose ABC transporter substrate-binding protein RbsB
F4V73_RS09115 F4V73_RS09115 Morganella psychrotolerans - substrate-binding domain-containing protein
F4V73_RS17745 F4V73_RS17745 Morganella psychrotolerans rbsB ribose ABC transporter substrate-binding protein RbsB
PMI_RS00430 PMI_RS00430 Proteus mirabilis HI4320 rbsB ribose ABC transporter substrate-binding protein RbsB

Distribution of group_396 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_396 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_396

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_396.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rbsB 7
2 - 1

Product

# Product Occurence
1 ribose ABC transporter substrate-binding protein RbsB 7
2 substrate-binding domain-containing protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1879 8 G Carbohydrate transport and metabolism (G) ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K10439 8 ribose transport system substrate-binding protein ABC transporters
Bacterial chemotaxis		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF13407 8 Periplasmic binding protein domain

Annotations of the 188 SwissProt hits

Annotation Number of occurrences
ABC transporter periplasmic-binding protein YphF 1
Arabinose metabolism transcriptional repressor 2
Autoinducer 2-binding periplasmic protein LuxP 5
Autoinducer 2-binding protein LsrB 26
Catabolite control protein A 2
Catabolite repressor/activator 6
D-allose-binding periplasmic protein 1
D-apiose import binding protein 4
D-galactose/methyl-galactoside binding periplasmic protein MglB 6
D-ribose/D-allose-binding protein 1
D-threitol-binding protein 1
D-xylose-binding periplasmic protein 2
Fructose import binding protein FrcB 1
Fructose import binding protein FruE 1
Galactofuranose-binding protein YtfQ 1
HTH-type transcriptional regulator AscG 1
HTH-type transcriptional regulator CelR 1
HTH-type transcriptional regulator DegA 1
HTH-type transcriptional regulator GalR 3
HTH-type transcriptional regulator GalS 2
HTH-type transcriptional regulator GntR 1
HTH-type transcriptional regulator IdnR 1
HTH-type transcriptional regulator KdgR 1
HTH-type transcriptional regulator MalR 1
HTH-type transcriptional regulator RegA 1
HTH-type transcriptional repressor PurR 88
L-arabinose-binding periplasmic protein 1
Lactose operon repressor 1
Lactose operon repressor (Fragment) 1
Multiple sugar-binding periplasmic receptor ChvE 2
Periplasmic protein TorT 2
Probable ABC transporter periplasmic-binding protein y4mI 1
Probable HTH-type transcriptional repressor ExuR 1
Putative rhizopine-binding protein 1
Ribose import binding protein RbsB 5
Ribose operon repressor 8
Sucrose operon repressor 1
Uncharacterized HTH-type transcriptional regulator YcjW 1
Xylitol-binding protein 1
Xylose/arabinose-binding protein XylF 1

Protein length

Min length 296
Max length 308
Mean length (sd) 297.5 (4.2)
Median length 296.0

Protein length distribution