Orthogroup:group_3693



Homologs in group_3693

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4 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
PMI_RS00880 PMI_RS00880 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS02630 PMI_RS02630 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS04780 PMI_RS04780 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS17440 PMI_RS17440 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of group_3693 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3693 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3693

Orthogroup content: 4 members

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This page summarizes the annotation of all members of the orthologous group group_3693.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 4

Product

# Product Occurence
1 helix-turn-helix transcriptional regulator 4

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1396 4 K Transcription (K) Transcriptional regulator, contains XRE-family HTH domain

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01381 4 Helix-turn-helix

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG042615 2 helix-turn-helix transcriptional regulator VF1235 Adherence

Annotations of the 8 SwissProt hits

Annotation Number of occurrences
HTH-type transcriptional regulator DicA 1
Repressor protein C2 1
Uncharacterized HTH-type transcriptional regulator MT0491 1
Uncharacterized HTH-type transcriptional regulator R00410 1
Uncharacterized HTH-type transcriptional regulator Rv0474 1
Uncharacterized HTH-type transcriptional regulator Smed_0045 1
Uncharacterized HTH-type transcriptional regulator y4wC 1
Uncharacterized transcriptional regulator in ATPase CF(0) region 1

Protein length

Min length 85
Max length 102
Mean length (sd) 96.5 (7.9)
Median length 99.5

Protein length distribution