Orthogroup:group_3684


Homologs in group_3684

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4 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
F4V73_RS00065 F4V73_RS00065 Morganella psychrotolerans vgrG type VI secretion system tip protein VgrG
F4V73_RS06965 F4V73_RS06965 Morganella psychrotolerans tssI type VI secretion system tip protein TssI/VgrG
F4V73_RS09330 F4V73_RS09330 Morganella psychrotolerans tssI type VI secretion system tip protein TssI/VgrG
F4V73_RS16810 F4V73_RS16810 Morganella psychrotolerans vgrG type VI secretion system Vgr family protein

Distribution of group_3684 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3684 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3684

Orthogroup content: 4 members

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This page summarizes the annotation of all members of the orthologous group group_3684.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 vgrG 2
2 tssI 2

Product

# Product Occurence
1 type VI secretion system tip protein VgrG 1
2 type VI secretion system tip protein TssI/VgrG 2
3 type VI secretion system Vgr family protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3501 4 UXR Intracellular trafficking, secretion, and vesicular transport (U)
Mobilome: prophages, transposons (X)
General function prediction only (R)		 Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11904 4 type VI secretion system secreted protein VgrG Bacterial secretion system -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04717 4 Type VI secretion system/phage-baseplate injector OB domain
PF05954 4 Phage tail baseplate hub (GPD)
PF10106 2 Uncharacterized protein conserved in bacteria (DUF2345)
PF13296 1 Putative type VI secretion system Rhs element Vgr
PF22178 3 Bacteriophage T4 gp5 C-terminal trimerisation domain

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG041079 1 type VI secretion system tip protein VgrG VF1036 Effector delivery system

Annotations of the 35 SwissProt hits

Annotation Number of occurrences
A-kinase anchor protein 5 1
Actin cross-linking toxin VgrG1 2
Actin cytoskeleton-regulatory complex protein sla1 1
Autotransporter adhesin BpaC 2
DNA-directed RNA polymerase II subunit RPB1 4
Filamentous hemagglutinin 1
Microtubule-actin cross-linking factor 1, isoforms 6/7 2
Neurofilament medium polypeptide 1
Platelet glycoprotein Ib alpha chain 1
Polycystin-1-like protein 3 1
Protein piccolo 2
Proteoglycan 4 1
Putative type VI secretion system protein VgrGA 1
Putative type VI secretion system protein VgrGB 1
RNA-binding protein 12 1
Type VI secretion system spike protein VgrG1 2
Type VI secretion system spike protein VgrG1a 1
Type VI secretion system spike protein VgrG1b 1
Type VI secretion system spike protein VgrG1c 1
Type VI secretion system spike protein VgrG2 2
Type VI secretion system spike protein VgrG2a 1
Type VI secretion system spike protein VgrG2b 1
Type VI secretion system spike protein VgrG3 2
Type VI secretion system spike protein VgrG4b 1
Type VI secretion system spike protein VgrG5 1

Protein length

Min length 646
Max length 866
Mean length (sd) 772.8 (92.1)
Median length 789.5

Protein length distribution