Orthogroup:group_3684



Homologs in group_3684

Help

3 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
F4V73_RS01640 F4V73_RS01640 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS02265 F4V73_RS02265 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
PMI_RS10875 PMI_RS10875 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of group_3684 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_3684 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3684

Orthogroup content: 3 members

Help

This page summarizes the annotation of all members of the orthologous group group_3684.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 3

Product

# Product Occurence
1 helix-turn-helix transcriptional regulator 3

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1396 3 K Transcription (K) Transcriptional regulator, contains XRE-family HTH domain

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01381 3 Helix-turn-helix

Annotations of the 12 SwissProt hits

Annotation Number of occurrences
Antitoxin PezA 1
HTH-type transcriptional regulator PrpR 1
Putative HTH-type transcriptional regulatory protein PF1851 1
Putative HTH-type transcriptional regulatory protein PH1808 1
Putative HTH-type transcriptional regulatory protein PYRAB03670 1
Putative HTH-type transcriptional regulatory protein TK0539 1
Uncharacterized HTH-type transcriptional regulator R00410 1
Uncharacterized HTH-type transcriptional regulator RC0668 1
Uncharacterized HTH-type transcriptional regulator RP497 1
Uncharacterized HTH-type transcriptional regulator Smed_0045 1
Uncharacterized HTH-type transcriptional regulator YqaE 1
Uncharacterized HTH-type transcriptional regulator y4wC 1

Protein length

Min length 86
Max length 100
Mean length (sd) 91.7 (7.4)
Median length 89.0

Protein length distribution