Orthogroup:group_348


Homologs in group_348

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_12235 FBDBKF_12235 Morganella morganii S1 cytR DNA-binding transcriptional regulator CytR
EHELCC_14070 EHELCC_14070 Morganella morganii S2 cytR DNA-binding transcriptional regulator CytR
NLDBIP_15165 NLDBIP_15165 Morganella morganii S4 cytR DNA-binding transcriptional regulator CytR
LHKJJB_15445 LHKJJB_15445 Morganella morganii S3 cytR DNA-binding transcriptional regulator CytR
HKOGLL_14565 HKOGLL_14565 Morganella morganii S5 cytR DNA-binding transcriptional regulator CytR
F4V73_RS17065 F4V73_RS17065 Morganella psychrotolerans cytR DNA-binding transcriptional regulator CytR
PMI_RS14670 PMI_RS14670 Proteus mirabilis HI4320 - extracellular solute-binding protein
PMI_RS15915 PMI_RS15915 Proteus mirabilis HI4320 cytR DNA-binding transcriptional regulator CytR

Distribution of group_348 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_348 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_348

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_348.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 cytR 7
2 - 1

Product

# Product Occurence
1 DNA-binding transcriptional regulator CytR 7
2 extracellular solute-binding protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1609 7 K Transcription (K) DNA-binding transcriptional regulator, LacI/PurR family
COG1653 1 G Carbohydrate transport and metabolism (G) ABC-type glycerol-3-phosphate transport system, periplasmic component

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K05499 7 LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00356 8 Bacterial regulatory proteins, lacI family
PF00532 7 Periplasmic binding proteins and sugar binding domain of LacI family
PF01547 1 Bacterial extracellular solute-binding protein

Annotations of the 196 SwissProt hits

Annotation Number of occurrences
Arabinose metabolism transcriptional repressor 3
Catabolite control protein A 12
Catabolite control protein B 1
Catabolite repressor/activator 6
D-ribose/D-allose-binding protein 1
Fructose operon regulatory protein 1
HTH-type transcriptional regulator AglR 1
HTH-type transcriptional regulator AscG 1
HTH-type transcriptional regulator CelR 1
HTH-type transcriptional regulator Cphy_2742 1
HTH-type transcriptional regulator DegA 1
HTH-type transcriptional regulator EbgR 1
HTH-type transcriptional regulator GalR 6
HTH-type transcriptional regulator GalS 2
HTH-type transcriptional regulator GanR 1
HTH-type transcriptional regulator GntR 3
HTH-type transcriptional regulator IdnR 1
HTH-type transcriptional regulator IpsA 1
HTH-type transcriptional regulator KdgR 1
HTH-type transcriptional regulator LacR 1
HTH-type transcriptional regulator MalR 5
HTH-type transcriptional regulator PtxS 3
HTH-type transcriptional regulator RafR 1
HTH-type transcriptional regulator RegA 2
HTH-type transcriptional regulator TreR 2
HTH-type transcriptional regulator pepR1 1
HTH-type transcriptional regulator reg1 1
HTH-type transcriptional repressor CytR 4
HTH-type transcriptional repressor MelR 1
HTH-type transcriptional repressor PurR 88
Lactose operon repressor 1
Lactose operon repressor (Fragment) 2
Maltose regulon regulatory protein MalI 1
Maltose regulon regulatory protein MalI (Fragment) 1
NTD biosynthesis operon regulator NtdR 1
Probable HTH-type transcriptional regulator EndR 1
Probable HTH-type transcriptional repressor ExuR 1
Probable amino-acid ABC transporter periplasmic-binding protein y4oP 1
Probable opine utilization operon repressor (Fragment) 1
Ribitol operon repressor 1
Ribose import binding protein RbsB 5
Ribose operon repressor 9
Sucrose operon repressor 9
Sulfoquinovosyl glycerol-binding protein SmoF 1
Uncharacterized HTH-type transcriptional regulator SCO4158 1
Uncharacterized HTH-type transcriptional regulator YcjW 1
Uncharacterized HTH-type transcriptional regulator YkvZ 1
Uncharacterized HTH-type transcriptional regulator YvdE 1
Uncharacterized HTH-type transcriptional regulator in aml 5'region 1
Uncharacterized HTH-type transcriptional regulator in aml 5'region (Fragment) 1
Xylose operon regulatory protein 1

Protein length

Min length 341
Max length 733
Mean length (sd) 390.9 (138.2)
Median length 342.0

Protein length distribution