Orthogroup:group_312


Homologs in group_312

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_09290 FBDBKF_09290 Morganella morganii S1 tadD Flp pilus assembly protein TadD, contains TPR repeats
EHELCC_10120 EHELCC_10120 Morganella morganii S2 tadD Flp pilus assembly protein TadD, contains TPR repeats
NLDBIP_10465 NLDBIP_10465 Morganella morganii S4 tadD Flp pilus assembly protein TadD, contains TPR repeats
LHKJJB_10890 LHKJJB_10890 Morganella morganii S3 tadD Flp pilus assembly protein TadD, contains TPR repeats
HKOGLL_13950 HKOGLL_13950 Morganella morganii S5 tadD Flp pilus assembly protein TadD, contains TPR repeats
F4V73_RS08290 F4V73_RS08290 Morganella psychrotolerans - SycD/LcrH family type III secretion system chaperone
F4V73_RS10675 F4V73_RS10675 Morganella psychrotolerans - tetratricopeptide repeat protein
PMI_RS13225 PMI_RS13225 Proteus mirabilis HI4320 sicA type III secretion system translocator chaperone SicA

Distribution of group_312 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_312 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_312

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_312.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tadD 5
2 - 2
3 sicA 1

Product

# Product Occurence
1 Flp pilus assembly protein TadD, contains TPR repeats 5
2 SycD/LcrH family type III secretion system chaperone 1
3 tetratricopeptide repeat protein 1
4 type III secretion system translocator chaperone SicA 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2956 8 M Cell wall/membrane/envelope biogenesis (M) Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K15368 1 secretion system chaperone SscA - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF07720 8 Tetratricopeptide repeat
PF13181 5 Tetratricopeptide repeat

Annotations of the 8 SwissProt hits

Annotation Number of occurrences
Chaperone protein IpgC 2
Chaperone protein SicA 3
Low calcium response locus protein H 2
Uncharacterized protein YgeG 1

Protein length

Min length 154
Max length 172
Mean length (sd) 157.8 (6.7)
Median length 154.0

Protein length distribution