Orthogroup:group_259


Homologs in group_259

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_04385 FBDBKF_04385 Morganella morganii S1 cra catabolite repressor/activator
EHELCC_05675 EHELCC_05675 Morganella morganii S2 cra catabolite repressor/activator
NLDBIP_05995 NLDBIP_05995 Morganella morganii S4 cra catabolite repressor/activator
LHKJJB_02875 LHKJJB_02875 Morganella morganii S3 cra catabolite repressor/activator
HKOGLL_06350 HKOGLL_06350 Morganella morganii S5 cra catabolite repressor/activator
F4V73_RS08830 F4V73_RS08830 Morganella psychrotolerans cra catabolite repressor/activator
PMI_RS10250 PMI_RS10250 Proteus mirabilis HI4320 cra catabolite repressor/activator
PMI_RS14505 PMI_RS14505 Proteus mirabilis HI4320 - LacI family DNA-binding transcriptional regulator

Distribution of group_259 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_259 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_259

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_259.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 cra 7
2 - 1

Product

# Product Occurence
1 catabolite repressor/activator 7
2 LacI family DNA-binding transcriptional regulator 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1609 8 K Transcription (K) DNA-binding transcriptional regulator, LacI/PurR family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03435 7 LacI family transcriptional regulator, fructose operon transcriptional repressor - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00356 7 Bacterial regulatory proteins, lacI family
PF13407 8 Periplasmic binding protein domain

Annotations of the 178 SwissProt hits

Annotation Number of occurrences
Arabinose metabolism transcriptional repressor 2
Catabolite control protein A 12
Catabolite control protein B 1
Catabolite repressor/activator 6
Fructose operon regulatory protein 1
Galactofuranose-binding protein YtfQ 1
HTH-type transcriptional regulator AglR 1
HTH-type transcriptional regulator AscG 1
HTH-type transcriptional regulator CelR 1
HTH-type transcriptional regulator Cphy_2742 1
HTH-type transcriptional regulator DegA 1
HTH-type transcriptional regulator GalR 4
HTH-type transcriptional regulator GalS 2
HTH-type transcriptional regulator GntR 3
HTH-type transcriptional regulator IdnR 1
HTH-type transcriptional regulator KdgR 1
HTH-type transcriptional regulator MalR 5
HTH-type transcriptional regulator PtxS 3
HTH-type transcriptional regulator RafR 1
HTH-type transcriptional regulator RegA 2
HTH-type transcriptional regulator TreR 2
HTH-type transcriptional regulator pepR1 1
HTH-type transcriptional regulator reg1 1
HTH-type transcriptional repressor CytR 4
HTH-type transcriptional repressor PurR 88
Lactose operon repressor 1
Maltose regulon regulatory protein MalI 1
Maltose regulon regulatory protein MalI (Fragment) 1
NTD biosynthesis operon regulator NtdR 1
Probable HTH-type transcriptional regulator EndR 1
Probable HTH-type transcriptional repressor ExuR 1
Ribitol operon repressor 1
Ribose import binding protein RbsB 5
Ribose operon repressor 9
Sucrose operon repressor 7
Uncharacterized HTH-type transcriptional regulator SCO4158 1
Uncharacterized HTH-type transcriptional regulator YcjW 1
Uncharacterized HTH-type transcriptional regulator YkvZ 1
Uncharacterized HTH-type transcriptional regulator in aml 5'region 1

Protein length

Min length 334
Max length 335
Mean length (sd) 334.1 (0.4)
Median length 334.0

Protein length distribution