Orthogroup:group_2404



Homologs in group_2404

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_19270 FBDBKF_19270 Morganella morganii S1 hybA hydrogenase 2 operon protein HybA
EHELCC_07555 EHELCC_07555 Morganella morganii S2 hybA hydrogenase 2 operon protein HybA
NLDBIP_07880 NLDBIP_07880 Morganella morganii S4 hybA hydrogenase 2 operon protein HybA
LHKJJB_07415 LHKJJB_07415 Morganella morganii S3 hybA hydrogenase 2 operon protein HybA
HKOGLL_03515 HKOGLL_03515 Morganella morganii S5 hybA hydrogenase 2 operon protein HybA
F4V73_RS12030 F4V73_RS12030 Morganella psychrotolerans hybA hydrogenase 2 operon protein HybA
PMI_RS00155 PMI_RS00155 Proteus mirabilis HI4320 hybA hydrogenase 2 operon protein HybA

Distribution of group_2404 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2404 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2404

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2404.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hybA 7

Product

# Product Occurence
1 hydrogenase 2 operon protein HybA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0437 7 C Energy production and conversion (C) Fe-S-cluster-containing dehydrogenase component (DMSO reductase)

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF13247 7 4Fe-4S dicluster domain

Annotations of the 64 SwissProt hits

Annotation Number of occurrences
Anaerobic dimethyl sulfoxide reductase chain B 3
Arsenate respiratory reductase iron-sulfur subunit ArrB 1
Chlorate reductase subunit beta 1
Dimethylsulfide dehydrogenase subunit beta 1
Electron transport protein HydN 3
Formate dehydrogenase 2 subunit beta (cytochrome c-553) 1
Formate dehydrogenase iron-sulfur subunit 2
Formate dehydrogenase subunit beta 1
Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit 2
Formate dehydrogenase-O iron-sulfur subunit 3
Formate hydrogenlyase subunit 2 3
Frd operon probable iron-sulfur subunit A (Fragment) 1
Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1 1
Hydrogenase-2 operon protein HybA 3
Hydrogenase-4 component A 1
Iron-sulfur protein 1
Menaquinone reductase, iron-sulfur cluster-binding subunit 1
NADH-dependent phenylglyoxylate dehydrogenase subunit beta 1
Nitrate reductase beta chain 1
Perchlorate reductase subunit beta 1
Polysulfide reductase chain B 1
Probable anaerobic dimethyl sulfoxide reductase chain YnfG 2
Protein DVU_0535 1
Protein NrfC 3
Protein NrfC homolog 1
Putative dimethyl sulfoxide reductase iron-sulfur subunit B 1
Putative electron transport protein YgfS 1
Putative electron transport protein YsaA 1
Putative oxidoreductase AegA 1
Putative oxidoreductase UacF 1
Respiratory nitrate reductase 1 beta chain 2
Respiratory nitrate reductase 2 beta chain 1
Respiratory nitrate reductase beta chain (Fragments) 1
Respiratory nitrate reductase subunit beta 1
Selenate reductase subunit beta 1
Sulfite dehydrogenase subunit B 1
Tetrathionate reductase subunit B 2
Thiosulfate reductase electron transfer subunit PhsB 2
Uncharacterized ferredoxin MJ0155 1
Uncharacterized ferredoxin MJ0265 1
Uncharacterized ferredoxin-like protein YdhX 2
Uncharacterized ferredoxin-like protein YdhY 3
Uncharacterized protein MJ0264 1

Protein length

Min length 327
Max length 337
Mean length (sd) 328.4 (3.8)
Median length 327.0

Protein length distribution