Homologs in group_2371

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19105 FBDBKF_19105 100.0 Morganella morganii S1 arfA Stalled ribosome alternative rescue factor ArfA
EHELCC_18850 EHELCC_18850 100.0 Morganella morganii S2 arfA Stalled ribosome alternative rescue factor ArfA
NLDBIP_18865 NLDBIP_18865 100.0 Morganella morganii S4 arfA Stalled ribosome alternative rescue factor ArfA
LHKJJB_18720 LHKJJB_18720 100.0 Morganella morganii S3 arfA Stalled ribosome alternative rescue factor ArfA
F4V73_RS19060 F4V73_RS19060 83.3 Morganella psychrotolerans - ribosome alternative rescue factor ArfA
PMI_RS16285 PMI_RS16285 66.7 Proteus mirabilis HI4320 - alternative ribosome-rescue factor A

Distribution of the homologs in the orthogroup group_2371

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2371

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P36675 4e-21 80 57 0 66 1 arfA Alternative ribosome-rescue factor A Escherichia coli (strain K12)
P44588 9.51e-16 67 63 1 55 3 arfA Alternative ribosome-rescue factor A Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_18455
Feature type CDS
Gene arfA
Product Stalled ribosome alternative rescue factor ArfA
Location 8932 - 9132 (strand: -1)
Length 201 (nucleotides) / 66 (amino acids)

Contig

Accession ZDB_706
Length 24827 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2371
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03889 Alternative ribosome-rescue factor A

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3036 Translation, ribosomal structure and biogenesis (J) J Stalled ribosome alternative rescue factor ArfA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09890 alternative ribosome-rescue factor - -

Protein Sequence

MTKYAHKRGVIQDNALEALLSDPLFRQRVEKNKKGKGSYNRKEKHNKADYREASSKRLDNLLLLAF

Flanking regions ( +/- flanking 50bp)

GCCCTGTGGCTGTTCACAAAAAGAGAGTAAACATAATCAATGAGGTTACTATGACAAAATATGCTCACAAGCGTGGCGTAATACAAGATAACGCCCTGGAAGCACTGCTATCCGATCCGTTGTTCCGGCAGAGAGTAGAAAAAAATAAGAAAGGTAAAGGGAGTTACAACCGGAAAGAAAAACACAACAAGGCAGATTACCGGGAGGCCAGTAGTAAACGATTAGATAATCTTTTACTACTGGCCTTTTAGTTTATTATTTCTTTTGTTCTTTTAATAAATCACGGATTTCAGTCAGTAAT