Orthogroup:group_2360



Homologs in group_2360

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_19040 FBDBKF_19040 Morganella morganii S1 yafD endonuclease/exonuclease/phosphatase family protein
EHELCC_18785 EHELCC_18785 Morganella morganii S2 yafD endonuclease/exonuclease/phosphatase family protein
NLDBIP_18520 NLDBIP_18520 Morganella morganii S4 yafD endonuclease/exonuclease/phosphatase family protein
LHKJJB_18655 LHKJJB_18655 Morganella morganii S3 yafD endonuclease/exonuclease/phosphatase family protein
HKOGLL_18390 HKOGLL_18390 Morganella morganii S5 yafD endonuclease/exonuclease/phosphatase family protein
F4V73_RS13945 F4V73_RS13945 Morganella psychrotolerans - endonuclease/exonuclease/phosphatase family protein
PMI_RS11120 PMI_RS11120 Proteus mirabilis HI4320 - endonuclease/exonuclease/phosphatase family protein

Distribution of group_2360 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2360 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2360

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2360.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 yafD 5
2 - 2

Product

# Product Occurence
1 endonuclease/exonuclease/phosphatase family protein 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3021 7 R General function prediction only (R) Uncharacterized conserved protein YafD, endonuclease/exonuclease/phosphatase (EEP) superfamily

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03372 7 Endonuclease/Exonuclease/phosphatase family

Annotations of the 45 SwissProt hits

Annotation Number of occurrences
UPF0294 protein ETA_26410 1
UPF0294 protein Ent638_0743 1
UPF0294 protein KPK_4510 1
UPF0294 protein VC0395_A1830/VC395_2354 1
UPF0294 protein VCM66_2161 1
UPF0294 protein VC_2238 1
UPF0294 protein VIBHAR_03217 1
UPF0294 protein VP2298 1
UPF0294 protein VV1_1880 1
UPF0294 protein VV2535 1
UPF0294 protein YE0917 1
UPF0294 protein YPO1077/y3099/YP_2772 1
UPF0294 protein YafD 31
UPF0294 protein YpsIP31758_1050 1
UPF0294 protein plu0699 1

Protein length

Min length 235
Max length 261
Mean length (sd) 242.4 (12.7)
Median length 235.0

Protein length distribution