Orthogroup:group_2349


Homologs in group_2349

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_18965 FBDBKF_18965 Morganella morganii S1 rpoS RNA polymerase sigma factor RpoS
EHELCC_18710 EHELCC_18710 Morganella morganii S2 rpoS RNA polymerase sigma factor RpoS
NLDBIP_18595 NLDBIP_18595 Morganella morganii S4 rpoS RNA polymerase sigma factor RpoS
LHKJJB_18580 LHKJJB_18580 Morganella morganii S3 rpoS RNA polymerase sigma factor RpoS
HKOGLL_18315 HKOGLL_18315 Morganella morganii S5 rpoS RNA polymerase sigma factor RpoS
F4V73_RS13875 F4V73_RS13875 Morganella psychrotolerans rpoS RNA polymerase sigma factor RpoS
PMI_RS11015 PMI_RS11015 Proteus mirabilis HI4320 rpoS RNA polymerase sigma factor RpoS

Distribution of group_2349 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2349 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2349

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2349.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rpoS 7

Product

# Product Occurence
1 RNA polymerase sigma factor RpoS 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0568 7 K Transcription (K) DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03087 7 RNA polymerase nonessential primary-like sigma factor Biofilm formation - Escherichia coli
Biofilm formation - Vibrio cholerae		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00140 7 Sigma-70 factor, region 1.2
PF04539 7 Sigma-70 region 3
PF04542 7 Sigma-70 region 2
PF04545 7 Sigma-70, region 4

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG000477 7 RNA polymerase sigma factor RpoS VF0112 Regulation

Annotations of the 159 SwissProt hits

Annotation Number of occurrences
Probable RNA polymerase sigma-C factor 1
Putative RNA polymerase sigma-G factor (Fragment) 1
RNA polymerase principal sigma factor HrdA 1
RNA polymerase principal sigma factor HrdB 2
RNA polymerase principal sigma factor HrdC 1
RNA polymerase principal sigma factor HrdD 3
RNA polymerase sigma factor FliA 7
RNA polymerase sigma factor RpoD 35
RNA polymerase sigma factor RpoD (Fragment) 1
RNA polymerase sigma factor RpoH 18
RNA polymerase sigma factor RpoS 11
RNA polymerase sigma factor SigA 36
RNA polymerase sigma factor SigA (Fragment) 1
RNA polymerase sigma factor SigA1 1
RNA polymerase sigma factor SigA2 1
RNA polymerase sigma factor SigA3 1
RNA polymerase sigma factor SigA4 1
RNA polymerase sigma factor SigB 3
RNA polymerase sigma factor SigF 2
RNA polymerase sigma factor WhiG 1
RNA polymerase sigma factor sigA 2
RNA polymerase sigma factor sigB 1
RNA polymerase sigma factor sigC 1
RNA polymerase sigma factor sigD, chloroplastic 1
RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 1
RNA polymerase sigma factor sigF, chloroplastic 1
RNA polymerase sigma-28 factor 3
RNA polymerase sigma-35 factor 3
RNA polymerase sigma-B factor 5
RNA polymerase sigma-C factor 2
RNA polymerase sigma-D factor 1
RNA polymerase sigma-E factor 2
RNA polymerase sigma-F factor 5
RNA polymerase sigma-G factor 2
RNA polymerase sigma-K factor 1

Protein length

Min length 329
Max length 333
Mean length (sd) 330.3 (1.3)
Median length 330.0

Protein length distribution