Orthogroup:group_2330


Homologs in group_2330

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_18235 FBDBKF_18235 Morganella morganii S1 lysR DNA-binding transcriptional regulator, LysR family
EHELCC_18270 EHELCC_18270 Morganella morganii S2 lysR DNA-binding transcriptional regulator, LysR family
NLDBIP_18195 NLDBIP_18195 Morganella morganii S4 lysR DNA-binding transcriptional regulator, LysR family
LHKJJB_18390 LHKJJB_18390 Morganella morganii S3 lysR DNA-binding transcriptional regulator, LysR family
HKOGLL_18125 HKOGLL_18125 Morganella morganii S5 lysR DNA-binding transcriptional regulator, LysR family
F4V73_RS01765 F4V73_RS01765 Morganella psychrotolerans - LysR family transcriptional regulator
F4V73_RS17425 F4V73_RS17425 Morganella psychrotolerans - LysR family transcriptional regulator

Distribution of group_2330 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2330 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2330

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2330.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 lysR 5
2 - 2

Product

# Product Occurence
1 DNA-binding transcriptional regulator, LysR family 5
2 LysR family transcriptional regulator 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0583 7 K Transcription (K) DNA-binding transcriptional regulator, LysR family

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00126 7 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 7 LysR substrate binding domain

Annotations of the 94 SwissProt hits

Annotation Number of occurrences
HTH-type transcriptional activator IlvY 2
HTH-type transcriptional activator NagR 1
HTH-type transcriptional activator NahR 1
HTH-type transcriptional regulator ArgP 1
HTH-type transcriptional regulator BsdA 1
HTH-type transcriptional regulator BudR (Fragment) 1
HTH-type transcriptional regulator CbbR 3
HTH-type transcriptional regulator CfxR 1
HTH-type transcriptional regulator CysL 1
HTH-type transcriptional regulator DgdR 1
HTH-type transcriptional regulator IlvR 1
HTH-type transcriptional regulator IlvY 1
HTH-type transcriptional regulator LeuO 1
HTH-type transcriptional regulator LinR 1
HTH-type transcriptional regulator MetR 6
HTH-type transcriptional regulator NmoR 1
HTH-type transcriptional regulator PcaQ 2
HTH-type transcriptional regulator PhcA 1
HTH-type transcriptional regulator SyrM 2
HTH-type transcriptional regulator SyrM 1 1
HTH-type transcriptional regulator SyrM 2 1
HTH-type transcriptional regulator TdcA 3
HTH-type transcriptional regulator YidZ 26
HTH-type transcriptional regulator YtlI 1
Nodulation protein D 5
Nodulation protein D 1 10
Nodulation protein D 2 8
Nodulation protein D 3 3
PCP degradation transcriptional activation protein 1
Probable HTH-type transcriptional regulator LeuO 1
Probable cat1 operon transcriptional activator 1
Uncharacterized HTH-type transcriptional regulator YbdO 1
Uncharacterized HTH-type transcriptional regulator YbeF 1
Uncharacterized HTH-type transcriptional regulator YnfL 1
Uncharacterized HTH-type transcriptional regulator YwbI 1

Protein length

Min length 297
Max length 300
Mean length (sd) 297.4 (1.1)
Median length 297.0

Protein length distribution