COG0422


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0422, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 4-amino-2-methyl-5-hydroxymethylpyrimidine (HMP) synthase ThiC
Function(s) descr. Coenzyme transport and metabolism (H)

Occurence in the database

COG0422 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2296 FBDBKF_17635 21804 23753 -1 thiC phosphomethylpyrimidine synthase ThiC Morganella morganii S1
1 group_2296 EHELCC_18120 21180 23129 -1 thiC phosphomethylpyrimidine synthase ThiC Morganella morganii S2
2 group_2296 NLDBIP_18030 15608 17557 1 thiC phosphomethylpyrimidine synthase ThiC Morganella morganii S4
3 group_2296 LHKJJB_18225 15608 17557 1 thiC phosphomethylpyrimidine synthase ThiC Morganella morganii S3
4 group_2296 HKOGLL_17975 21180 23129 -1 thiC phosphomethylpyrimidine synthase ThiC Morganella morganii S5
5 group_2296 F4V73_RS15015 240439 242391 -1 thiC phosphomethylpyrimidine synthase ThiC Morganella psychrotolerans
6 group_2296 PMI_RS13715 3046719 3048671 1 thiC phosphomethylpyrimidine synthase ThiC Proteus mirabilis HI4320