Homologs in group_2272

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17475 FBDBKF_17475 100.0 Morganella morganii S1 yedF sulfurtransferase-like selenium metabolism protein YedF
EHELCC_17370 EHELCC_17370 100.0 Morganella morganii S2 yedF sulfurtransferase-like selenium metabolism protein YedF
LHKJJB_17745 LHKJJB_17745 100.0 Morganella morganii S3 yedF sulfurtransferase-like selenium metabolism protein YedF
HKOGLL_17755 HKOGLL_17755 100.0 Morganella morganii S5 yedF sulfurtransferase-like selenium metabolism protein YedF
F4V73_RS16650 F4V73_RS16650 93.8 Morganella psychrotolerans yedF sulfurtransferase-like selenium metabolism protein YedF
PMI_RS00205 PMI_RS00205 92.5 Proteus mirabilis HI4320 yedF sulfurtransferase-like selenium metabolism protein YedF

Distribution of the homologs in the orthogroup group_2272

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2272

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AA36 9.45e-47 146 94 0 74 3 yedF Putative sulfur carrier protein YedF Shigella flexneri
P0AA34 9.45e-47 146 94 0 74 3 yedF Putative sulfur carrier protein YedF Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0AA35 9.45e-47 146 94 0 74 3 yedF Putative sulfur carrier protein YedF Salmonella typhi
P0AA31 9.45e-47 146 94 0 74 1 yedF Putative sulfur carrier protein YedF Escherichia coli (strain K12)
P0AA32 9.45e-47 146 94 0 74 3 yedF Putative sulfur carrier protein YedF Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AA33 9.45e-47 146 94 0 74 3 yedF Putative sulfur carrier protein YedF Escherichia coli O157:H7
Q9X078 2.63e-12 59 49 0 61 1 TM_0983 Putative sulfur carrier protein TM_0983 Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
O29697 2.74e-08 49 30 0 71 3 AF_0554 Putative sulfur carrier protein AF_0554 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
P54436 3.68e-08 48 34 0 72 3 yrkI Putative sulfur carrier protein YrkI Bacillus subtilis (strain 168)
Q3YW58 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Shigella sonnei (strain Ss046)
P0A893 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Shigella flexneri
Q0SZK3 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Shigella flexneri serotype 5b (strain 8401)
Q32AR4 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Shigella dysenteriae serotype 1 (strain Sd197)
Q31VF6 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Shigella boydii serotype 4 (strain Sb227)
B2U4C2 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
Q1R5E9 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Escherichia coli (strain UTI89 / UPEC)
B6I335 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Escherichia coli (strain SE11)
P0A890 6.23e-08 48 31 0 72 1 tusA Sulfur carrier protein TusA Escherichia coli (strain K12)
B1J0G0 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
P0A891 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TBY8 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A8A5S8 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Escherichia coli O9:H4 (strain HS)
B1X7S8 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Escherichia coli (strain K12 / DH10B)
C4ZW19 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Escherichia coli (strain K12 / MC4100 / BW2952)
B7M2N3 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Escherichia coli O8 (strain IAI1)
B7N1Q8 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Escherichia coli O81 (strain ED1a)
B7NN84 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B5YUM9 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Escherichia coli O157:H7 (strain EC4115 / EHEC)
P0A892 6.23e-08 48 31 0 72 1 tusA Sulfur carrier protein TusA Escherichia coli O157:H7
B7L5S1 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Escherichia coli (strain 55989 / EAEC)
B7MDW0 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Escherichia coli O45:K1 (strain S88 / ExPEC)
B7UL22 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Escherichia coli O127:H6 (strain E2348/69 / EPEC)
A7ZT06 6.23e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Escherichia coli O139:H28 (strain E24377A / ETEC)
B7LST2 6.44e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
B1LID3 6.44e-08 48 31 0 72 3 tusA Sulfur carrier protein TusA Escherichia coli (strain SMS-3-5 / SECEC)
P54433 2.18e-07 48 33 0 68 3 yrkF Putative sulfur carrier protein YrkF Bacillus subtilis (strain 168)
O67415 3.63e-07 48 37 1 69 3 aq_1421 Putative sulfur carrier protein aq_1421 Aquifex aeolicus (strain VF5)
A7MHB0 4.79e-07 46 30 0 72 3 tusA Sulfur carrier protein TusA Cronobacter sakazakii (strain ATCC BAA-894)
B7NE79 1.1e-06 45 30 0 72 3 tusA Sulfur carrier protein TusA Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
B0KGD8 2.14e-06 44 31 0 76 3 tusA Sulfur carrier protein TusA Pseudomonas putida (strain GB-1)
Q88L21 2.46e-06 44 31 0 76 3 tusA Sulfur carrier protein TusA Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
A5W6I9 2.46e-06 44 31 0 76 3 tusA Sulfur carrier protein TusA Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1)
D3RPC0 2.89e-06 43 26 0 71 1 tusA Sulfur carrier protein TusA Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D)
P67100 3.22e-06 43 29 0 72 3 tusA Sulfur carrier protein TusA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P67101 3.22e-06 43 29 0 72 3 tusA Sulfur carrier protein TusA Salmonella typhi
B5BHL9 3.22e-06 43 29 0 72 3 tusA Sulfur carrier protein TusA Salmonella paratyphi A (strain AKU_12601)
Q5PJN7 3.22e-06 43 29 0 72 3 tusA Sulfur carrier protein TusA Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B5RGU8 3.22e-06 43 29 0 72 3 tusA Sulfur carrier protein TusA Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5R3X9 3.22e-06 43 29 0 72 3 tusA Sulfur carrier protein TusA Salmonella enteritidis PT4 (strain P125109)
Q57IP9 3.22e-06 43 29 0 72 3 tusA Sulfur carrier protein TusA Salmonella choleraesuis (strain SC-B67)
C4L772 3.4e-06 43 32 0 68 3 tusA Sulfur carrier protein TusA Tolumonas auensis (strain DSM 9187 / NBRC 110442 / TA 4)
A6VLN8 4.23e-06 43 28 0 70 3 tusA Sulfur carrier protein TusA Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
Q3IJ25 4.37e-06 43 27 0 72 3 tusA Sulfur carrier protein TusA Pseudoalteromonas translucida (strain TAC 125)
A8FP60 8.35e-06 42 30 0 70 3 tusA Sulfur carrier protein TusA Shewanella sediminis (strain HAW-EB3)
Q58397 9.03e-06 42 39 0 69 3 MJ0990 Putative sulfur carrier protein MJ0990 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q15MV9 9.09e-06 42 27 0 79 3 tusA Sulfur carrier protein TusA Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)
B8CH81 9.71e-06 42 28 0 70 3 tusA Sulfur carrier protein TusA Shewanella piezotolerans (strain WP3 / JCM 13877)
B3GZT1 1.3e-05 42 28 0 76 3 tusA Sulfur carrier protein TusA Actinobacillus pleuropneumoniae serotype 7 (strain AP76)
Q7VNY2 1.33e-05 42 30 0 71 3 tusA Sulfur carrier protein TusA Haemophilus ducreyi (strain 35000HP / ATCC 700724)
P33014 1.44e-05 42 31 0 60 1 tsuB Putative sulfur carrier protein TsuB Escherichia coli (strain K12)
Q65W80 1.51e-05 42 24 0 74 3 tusA Sulfur carrier protein TusA Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
B8F8H4 1.61e-05 42 26 0 76 3 tusA Sulfur carrier protein TusA Glaesserella parasuis serovar 5 (strain SH0165)
A8AR31 3.15e-05 41 27 0 72 3 tusA Sulfur carrier protein TusA Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
A6TF89 3.47e-05 41 27 0 72 3 tusA Sulfur carrier protein TusA Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
B5XTL8 3.47e-05 41 27 0 72 3 tusA Sulfur carrier protein TusA Klebsiella pneumoniae (strain 342)
P44841 3.52e-05 41 27 0 68 3 tusA Sulfur carrier protein TusA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
B0TLB5 3.55e-05 41 27 1 81 3 tusA Sulfur carrier protein TusA Shewanella halifaxensis (strain HAW-EB4)
C5B9A2 3.66e-05 41 29 0 72 3 tusA Sulfur carrier protein TusA Edwardsiella ictaluri (strain 93-146)
A3Q8U0 5.18e-05 40 27 0 70 3 tusA Sulfur carrier protein TusA Shewanella loihica (strain ATCC BAA-1088 / PV-4)
A8GYF4 5.35e-05 40 27 0 70 3 tusA Sulfur carrier protein TusA Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
A5UE04 5.54e-05 40 27 0 68 3 tusA Sulfur carrier protein TusA Haemophilus influenzae (strain PittEE)
B1KCY7 5.89e-05 40 28 0 70 3 tusA Sulfur carrier protein TusA Shewanella woodyi (strain ATCC 51908 / MS32)
A8G875 7.08e-05 40 28 0 71 3 tusA Sulfur carrier protein TusA Serratia proteamaculans (strain 568)
B1J5D6 7.25e-05 40 30 0 76 3 tusA Sulfur carrier protein TusA Pseudomonas putida (strain W619)
O30050 9.12e-05 40 28 2 70 3 AF_0188 Putative sulfur carrier protein AF_0188 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
A4WFQ2 0.000115 40 26 0 73 3 tusA Sulfur carrier protein TusA Enterobacter sp. (strain 638)
A3MYG4 0.000123 39 27 0 76 3 tusA Sulfur carrier protein TusA Actinobacillus pleuropneumoniae serotype 5b (strain L20)
Q1I7B2 0.000134 39 28 0 76 3 tusA Sulfur carrier protein TusA Pseudomonas entomophila (strain L48)
A9KU88 0.000157 39 27 0 70 3 tusA Sulfur carrier protein TusA Shewanella baltica (strain OS195)
A3CYJ2 0.000157 39 27 0 70 3 tusA Sulfur carrier protein TusA Shewanella baltica (strain OS155 / ATCC BAA-1091)
B8E3R0 0.000157 39 27 0 70 3 tusA Sulfur carrier protein TusA Shewanella baltica (strain OS223)
B4EWZ6 0.000178 39 29 0 68 3 tusA Sulfur carrier protein TusA Proteus mirabilis (strain HI4320)
B1JPB6 0.000196 39 26 0 72 3 tusA Sulfur carrier protein TusA Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66FX1 0.000196 39 26 0 72 3 tusA Sulfur carrier protein TusA Yersinia pseudotuberculosis serotype I (strain IP32953)
Q8ZAI0 0.000196 39 26 0 72 3 tusA Sulfur carrier protein TusA Yersinia pestis
B2K098 0.000196 39 26 0 72 3 tusA Sulfur carrier protein TusA Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A7FDA1 0.000196 39 26 0 72 3 tusA Sulfur carrier protein TusA Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A6WH97 0.000199 39 27 0 70 3 tusA Sulfur carrier protein TusA Shewanella baltica (strain OS185)
O54608 0.000234 39 33 1 69 3 VNG_5061C Putative sulfur carrier protein VNG_5061C/VNG_5236C/VNG_6059C/VNG_6467C Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
A0KEK5 0.000241 39 28 0 70 3 tusA Sulfur carrier protein TusA Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
A4STF8 0.000242 39 28 0 70 3 tusA Sulfur carrier protein TusA Aeromonas salmonicida (strain A449)
A5UHK3 0.000295 38 26 0 68 3 tusA Sulfur carrier protein TusA Haemophilus influenzae (strain PittGG)
Q4QMJ8 0.000295 38 26 0 68 3 tusA Sulfur carrier protein TusA Haemophilus influenzae (strain 86-028NP)
B2VJN9 0.000447 38 27 0 72 3 tusA Sulfur carrier protein TusA Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
A1JIB4 0.000489 38 30 2 73 3 tusA Sulfur carrier protein TusA Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q0I0T6 0.000624 38 25 0 70 3 tusA Sulfur carrier protein TusA Shewanella sp. (strain MR-7)
Q0HPC2 0.000624 38 25 0 70 3 tusA Sulfur carrier protein TusA Shewanella sp. (strain MR-4)
A1RDW2 0.000765 37 25 0 70 3 tusA Sulfur carrier protein TusA Shewanella sp. (strain W3-18-1)
A4Y1B4 0.000765 37 25 0 70 3 tusA Sulfur carrier protein TusA Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
A0KR47 0.00079 37 25 0 70 3 tusA Sulfur carrier protein TusA Shewanella sp. (strain ANA-3)
Q2NWX1 0.000854 37 29 0 71 3 tusA Sulfur carrier protein TusA Sodalis glossinidius (strain morsitans)
Q6LW10 0.001 37 25 0 72 3 tusA Sulfur carrier protein TusA Photobacterium profundum (strain SS9)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_17825
Feature type CDS
Gene yedF
Product sulfurtransferase-like selenium metabolism protein YedF
Location 13539 - 13784 (strand: 1)
Length 246 (nucleotides) / 81 (amino acids)

Contig

Accession ZDB_538
Length 42795 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2272
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01206 Sulfurtransferase TusA

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0425 Translation, ribosomal structure and biogenesis (J)
Coenzyme transport and metabolism (H)
Posttranslational modification, protein turnover, chaperones (O)		 JHO Sulfur carrier protein TusA (tRNA thiolation, molybdenum cofactor biosynthesis)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K04085 tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] Sulfur relay system -

Protein Sequence

MNTENTAIVPDYRLDMVGEPCPYPAVATLEAMPSLKPGEILEVVSDCPQSINNIPLDAKNHGYTVLSIQQDGPTIRYLIQK

Flanking regions ( +/- flanking 50bp)

GAAAAACCAGGCTGACACTGTCGCCGCTGCCGCACATTAAGGAGCACACCATGAATACCGAAAATACTGCAATTGTGCCGGATTACCGGCTGGATATGGTCGGTGAGCCGTGCCCGTATCCGGCAGTGGCGACTCTTGAAGCCATGCCGTCACTGAAACCCGGAGAGATCCTGGAAGTGGTGAGTGACTGCCCGCAATCCATCAACAATATCCCGCTGGATGCCAAAAACCACGGCTACACTGTGCTGTCCATCCAGCAGGACGGGCCGACAATCCGCTATCTGATACAGAAATAATGCGGTTTCGGGTGCCGGTTATCCGCCGGTGCCCGTCAGCGTTTCAGTAA