COG0648


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0648, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Endonuclease IV
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG0648 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1977 FBDBKF_14830 67819 68661 1 nfo deoxyribonuclease IV Morganella morganii S1
1 group_1977 EHELCC_15635 97895 98737 1 nfo deoxyribonuclease IV Morganella morganii S2
2 group_1977 NLDBIP_16165 97895 98737 1 nfo deoxyribonuclease IV Morganella morganii S4
3 group_1977 LHKJJB_15675 17949 18791 -1 nfo deoxyribonuclease IV Morganella morganii S3
4 group_1977 HKOGLL_14795 17161 18003 -1 nfo deoxyribonuclease IV Morganella morganii S5
5 group_1977 F4V73_RS07630 1597277 1598119 1 nfo deoxyribonuclease IV Morganella psychrotolerans
6 group_1977 PMI_RS04115 919367 920212 -1 nfo deoxyribonuclease IV Proteus mirabilis HI4320