COG0833


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0833, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Amino acid permease
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG0833 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1974 FBDBKF_14815 63910 65391 -1 lysP Amino acid permease Morganella morganii S1
1 group_1974 EHELCC_15620 93986 95467 -1 lysP Amino acid permease Morganella morganii S2
2 group_1974 NLDBIP_16150 93986 95467 -1 lysP Amino acid permease Morganella morganii S4
3 group_1974 LHKJJB_15690 21219 22700 1 lysP Amino acid permease Morganella morganii S3
4 group_1974 HKOGLL_14810 20431 21912 1 lysP Amino acid permease Morganella morganii S5
5 group_1974 F4V73_RS07615 1593371 1594870 -1 amino acid permease Morganella psychrotolerans
6 group_1974 PMI_RS04130 922643 924130 1 amino acid permease Proteus mirabilis HI4320