Orthogroup:group_20


Homologs in group_20

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15 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_09110 FBDBKF_09110 Morganella morganii S1 fimC P pilus assembly protein, chaperone PapD
FBDBKF_10795 FBDBKF_10795 Morganella morganii S1 fimC P pilus assembly protein, chaperone PapD
EHELCC_10300 EHELCC_10300 Morganella morganii S2 fimC P pilus assembly protein, chaperone PapD
EHELCC_15130 EHELCC_15130 Morganella morganii S2 fimC P pilus assembly protein, chaperone PapD
NLDBIP_10645 NLDBIP_10645 Morganella morganii S4 fimC P pilus assembly protein, chaperone PapD
NLDBIP_14960 NLDBIP_14960 Morganella morganii S4 fimC P pilus assembly protein, chaperone PapD
LHKJJB_10710 LHKJJB_10710 Morganella morganii S3 fimC P pilus assembly protein, chaperone PapD
LHKJJB_14385 LHKJJB_14385 Morganella morganii S3 fimC P pilus assembly protein, chaperone PapD
HKOGLL_13005 HKOGLL_13005 Morganella morganii S5 fimC P pilus assembly protein, chaperone PapD
HKOGLL_13770 HKOGLL_13770 Morganella morganii S5 fimC P pilus assembly protein, chaperone PapD
F4V73_RS01065 F4V73_RS01065 Morganella psychrotolerans - molecular chaperone
F4V73_RS05995 F4V73_RS05995 Morganella psychrotolerans - fimbria/pilus periplasmic chaperone
F4V73_RS09380 F4V73_RS09380 Morganella psychrotolerans - molecular chaperone
F4V73_RS10840 F4V73_RS10840 Morganella psychrotolerans - molecular chaperone
F4V73_RS12585 F4V73_RS12585 Morganella psychrotolerans - molecular chaperone

Distribution of group_20 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_20 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_20

Orthogroup content: 15 members

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This page summarizes the annotation of all members of the orthologous group group_20.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 fimC 10
2 - 5

Product

# Product Occurence
1 P pilus assembly protein, chaperone PapD 10
2 molecular chaperone 4
3 fimbria/pilus periplasmic chaperone 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3121 15 W Extracellular structures (W) P pilus assembly protein, chaperone PapD

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07346 4 fimbrial chaperone protein Two-component system -
K15540 11 chaperone protein EcpD - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00345 15 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PF02753 14 Pili assembly chaperone PapD, C-terminal domain

Annotations of the 39 SwissProt hits

Annotation Number of occurrences
Chaperone protein AfaB 1
Chaperone protein AggD 1
Chaperone protein CS3-1 1
Chaperone protein ClpE 1
Chaperone protein CssC 2
Chaperone protein FaeE 1
Chaperone protein FanE 1
Chaperone protein FimB/FhaD 1
Chaperone protein FimC 3
Chaperone protein FocC 2
Chaperone protein HifB 2
Chaperone protein LpfB 1
Chaperone protein MrkB 1
Chaperone protein MyfB 1
Chaperone protein NfaE 1
Chaperone protein PapD 1
Chaperone protein PmfD 1
Chaperone protein PrsD (Fragment) 1
Chaperone protein PsaB 2
Chaperone protein SefB 1
Chaperone protein caf1M 1
Probable fimbrial chaperone LpfB 1
Probable fimbrial chaperone SfmC 1
Probable fimbrial chaperone YadV 1
Probable fimbrial chaperone YehC 1
Probable fimbrial chaperone YfcS 1
Probable fimbrial chaperone YraI 1
Probable fimbrial chaperone protein ElfD 2
Uncharacterized fimbrial chaperone YbgP 1
Uncharacterized fimbrial chaperone YcbF 1
Uncharacterized fimbrial chaperone YhcA 1
Uncharacterized fimbrial chaperone YqiH 1

Protein length

Min length 221
Max length 255
Mean length (sd) 233.8 (7.8)
Median length 232.0

Protein length distribution