Homologs in group_3

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24 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14600 FBDBKF_14600 28.5 Morganella morganii S1 fimC P pilus assembly protein, chaperone PapD
EHELCC_15405 EHELCC_15405 28.5 Morganella morganii S2 fimC P pilus assembly protein, chaperone PapD
NLDBIP_15935 NLDBIP_15935 28.5 Morganella morganii S4 fimC P pilus assembly protein, chaperone PapD
LHKJJB_15905 LHKJJB_15905 28.5 Morganella morganii S3 fimC P pilus assembly protein, chaperone PapD
HKOGLL_15025 HKOGLL_15025 28.5 Morganella morganii S5 fimC P pilus assembly protein, chaperone PapD
F4V73_RS01040 F4V73_RS01040 30.4 Morganella psychrotolerans - fimbria/pilus periplasmic chaperone
F4V73_RS01065 F4V73_RS01065 26.9 Morganella psychrotolerans - molecular chaperone
F4V73_RS01680 F4V73_RS01680 29.4 Morganella psychrotolerans - fimbria/pilus periplasmic chaperone
F4V73_RS01855 F4V73_RS01855 26.5 Morganella psychrotolerans - molecular chaperone
F4V73_RS05995 F4V73_RS05995 16.7 Morganella psychrotolerans - fimbria/pilus periplasmic chaperone
F4V73_RS07395 F4V73_RS07395 26.6 Morganella psychrotolerans - molecular chaperone
F4V73_RS08430 F4V73_RS08430 32.3 Morganella psychrotolerans - molecular chaperone
F4V73_RS08450 F4V73_RS08450 32.7 Morganella psychrotolerans - molecular chaperone
F4V73_RS08455 F4V73_RS08455 28.1 Morganella psychrotolerans - molecular chaperone
F4V73_RS10245 F4V73_RS10245 23.2 Morganella psychrotolerans - molecular chaperone
F4V73_RS10260 F4V73_RS10260 29.4 Morganella psychrotolerans - molecular chaperone
F4V73_RS10275 F4V73_RS10275 24.3 Morganella psychrotolerans - molecular chaperone
F4V73_RS10895 F4V73_RS10895 31.5 Morganella psychrotolerans - molecular chaperone
F4V73_RS12585 F4V73_RS12585 27.6 Morganella psychrotolerans - molecular chaperone
F4V73_RS13305 F4V73_RS13305 28.8 Morganella psychrotolerans - molecular chaperone
F4V73_RS13315 F4V73_RS13315 23.1 Morganella psychrotolerans - molecular chaperone
F4V73_RS13325 F4V73_RS13325 22.3 Morganella psychrotolerans - molecular chaperone
PMI_RS12530 PMI_RS12530 22.6 Proteus mirabilis HI4320 - molecular chaperone
PMI_RS16665 PMI_RS16665 27.8 Proteus mirabilis HI4320 - molecular chaperone

Distribution of the homologs in the orthogroup group_3

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P33128 3.6e-41 144 38 11 246 1 yadV Probable fimbrial chaperone YadV Escherichia coli (strain K12)
P35757 4.23e-39 139 37 9 244 3 hifB Chaperone protein HifB Haemophilus influenzae
P33409 4.78e-39 139 35 7 229 3 fimB Chaperone protein FimB/FhaD Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P45991 6.56e-39 138 37 9 243 3 hifB Chaperone protein HifB Haemophilus influenzae
P43661 3.84e-35 128 34 8 234 3 lpfB Chaperone protein LpfB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P21646 1.57e-31 119 35 12 244 3 mrkB Chaperone protein MrkB Klebsiella pneumoniae
P33342 1.97e-31 119 34 7 233 2 yehC Probable fimbrial chaperone YehC Escherichia coli (strain K12)
P15319 6.76e-31 117 35 11 237 1 papD Chaperone protein PapD Escherichia coli
Q8X5K6 4.95e-29 112 32 7 241 2 lpfB Probable fimbrial chaperone LpfB Escherichia coli O157:H7
P53520 2.64e-26 105 32 9 240 3 pmfD Chaperone protein PmfD Proteus mirabilis (strain HI4320)
P75749 1.42e-25 103 31 8 230 3 ybgP Uncharacterized fimbrial chaperone YbgP Escherichia coli (strain K12)
P42914 8.37e-25 101 29 8 230 2 yraI Probable fimbrial chaperone YraI Escherichia coli (strain K12)
P25401 2.65e-24 100 31 8 232 1 faeE Chaperone protein FaeE Escherichia coli
Q05433 5.58e-23 97 31 9 232 3 clpE Chaperone protein ClpE Escherichia coli
P25402 8.71e-22 93 31 9 238 3 fanE Chaperone protein FanE Escherichia coli
P77249 6.6e-21 91 28 8 242 2 sfmC Probable fimbrial chaperone SfmC Escherichia coli (strain K12)
P37923 2.11e-20 89 30 8 230 3 fimC Chaperone protein FimC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77616 2.22e-20 90 28 8 235 3 yqiH Uncharacterized fimbrial chaperone YqiH Escherichia coli (strain K12)
P77599 9.54e-20 88 39 6 161 2 yfcS Probable fimbrial chaperone YfcS Escherichia coli (strain K12)
P31697 3.19e-19 87 30 12 243 1 fimC Chaperone protein FimC Escherichia coli (strain K12)
P59590 7.1e-19 85 31 12 243 3 fimC Chaperone protein FimC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P75856 1.81e-18 84 27 7 234 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli (strain K12)
Q8X5E4 1.23e-17 82 27 7 230 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli O157:H7
P62609 3.51e-17 81 28 10 238 1 focC Chaperone protein FocC Escherichia coli
P62610 3.51e-17 81 28 10 238 3 focC Chaperone protein FocC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P69966 4.58e-17 81 28 6 236 3 psaB Chaperone protein PsaB Yersinia pseudotuberculosis serotype I (strain IP32953)
P69965 4.58e-17 81 28 6 236 3 psaB Chaperone protein PsaB Yersinia pestis
P33407 3.12e-13 70 26 9 266 3 myfB Chaperone protein MyfB Yersinia enterocolitica
P53516 1.64e-12 68 28 8 204 3 afaB Chaperone protein AfaB Escherichia coli
P26926 2.62e-12 68 28 9 228 1 caf1M Chaperone protein caf1M Yersinia pestis
P33387 2.74e-11 65 27 7 217 3 sefB Chaperone protein SefB Salmonella enteritidis
P40876 8.4e-10 60 26 10 242 2 ycbF Uncharacterized fimbrial chaperone YcbF Escherichia coli (strain K12)
P46004 1.51e-09 60 25 9 226 3 aggD Chaperone protein AggD Escherichia coli
P53519 3.01e-09 59 28 8 197 3 cssC Chaperone protein CssC Escherichia coli
P53518 4.07e-09 58 28 8 197 3 cssC Chaperone protein CssC Escherichia coli
P46738 5.93e-09 58 27 8 204 3 nfaE Chaperone protein NfaE Escherichia coli
P15483 1.35e-08 57 27 8 191 3 None Chaperone protein CS3-1 Escherichia coli
P42183 1.48e-06 49 32 6 111 3 prsD Chaperone protein PrsD (Fragment) Escherichia coli

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09380
Feature type CDS
Gene -
Product molecular chaperone
Location 1974980 - 1975747 (strand: -1)
Length 768 (nucleotides) / 255 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3
Orthogroup size 25
N. genomes 7

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Genomic region

Domains

PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PF02753 Pili assembly chaperone PapD, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3121 Extracellular structures (W) W P pilus assembly protein, chaperone PapD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K15540 chaperone protein EcpD - -

Protein Sequence

MFLNLMKSVLLFLLVSSTAMSSVTITGTRIIFIGDNKDQVVRLNNKSMTAPALVQVWVDDGIKINDINNKDIPFVVTPPVSRIEPNKGQSIRLIYNGMVLPQDKESIFYFNLLEIPPENPGAEGPRLDIAFKTRIKLFYRPAALLKSNVIEQADKLVLEQVNNPQKGTGIKVTNPTPYYANFSEMMVNVGGTVVKVNSDTADMVAPGSSVEFYGASALSGTVSEINCSILNDYGSPTDIKLIKGTGPGFTAVKAK

Flanking regions ( +/- flanking 50bp)

GAGCTACATCTGTAGCTCTATATTTTAGTTAACGGAATAACGGATAAATTATGTTTTTAAATTTAATGAAATCGGTTTTACTGTTTCTGCTGGTGAGCAGTACTGCAATGAGTTCGGTTACTATTACAGGAACCCGGATTATATTTATCGGAGACAATAAAGATCAGGTTGTCAGATTAAATAACAAGAGCATGACAGCCCCTGCATTGGTTCAGGTTTGGGTAGATGATGGTATCAAAATTAATGATATCAACAATAAAGATATCCCATTCGTTGTAACGCCGCCGGTCAGTCGTATTGAACCGAATAAAGGCCAAAGTATCCGGTTGATTTATAATGGAATGGTATTGCCACAGGATAAAGAATCGATATTTTATTTTAATCTTCTGGAAATTCCGCCCGAGAATCCCGGCGCTGAAGGTCCCCGTCTGGATATTGCGTTTAAAACACGCATTAAATTATTTTACCGTCCTGCCGCTTTATTAAAATCTAATGTTATTGAGCAGGCAGATAAGCTTGTGTTAGAGCAGGTAAATAATCCTCAAAAAGGAACCGGAATTAAAGTAACGAATCCGACTCCTTATTACGCCAATTTTTCAGAAATGATGGTGAATGTCGGGGGAACAGTCGTTAAAGTAAATTCAGATACAGCTGATATGGTAGCACCCGGTTCATCAGTAGAGTTTTATGGCGCTTCAGCGCTATCCGGCACAGTTTCTGAAATTAATTGCAGCATTCTTAATGACTATGGCTCACCAACTGATATCAAATTAATTAAAGGTACCGGACCCGGGTTCACCGCTGTAAAAGCAAAATAAATGGATTTATTTCGCAGTTATTCATGGATTGTGACTGCGTACAGAGGGGT