Homologs in group_20

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14 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09110 FBDBKF_09110 28.3 Morganella morganii S1 fimC P pilus assembly protein, chaperone PapD
FBDBKF_10795 FBDBKF_10795 31.7 Morganella morganii S1 fimC P pilus assembly protein, chaperone PapD
EHELCC_10300 EHELCC_10300 28.3 Morganella morganii S2 fimC P pilus assembly protein, chaperone PapD
EHELCC_15130 EHELCC_15130 31.7 Morganella morganii S2 fimC P pilus assembly protein, chaperone PapD
NLDBIP_10645 NLDBIP_10645 28.3 Morganella morganii S4 fimC P pilus assembly protein, chaperone PapD
NLDBIP_14960 NLDBIP_14960 31.7 Morganella morganii S4 fimC P pilus assembly protein, chaperone PapD
LHKJJB_10710 LHKJJB_10710 28.3 Morganella morganii S3 fimC P pilus assembly protein, chaperone PapD
LHKJJB_14385 LHKJJB_14385 31.7 Morganella morganii S3 fimC P pilus assembly protein, chaperone PapD
HKOGLL_13005 HKOGLL_13005 31.7 Morganella morganii S5 fimC P pilus assembly protein, chaperone PapD
HKOGLL_13770 HKOGLL_13770 28.3 Morganella morganii S5 fimC P pilus assembly protein, chaperone PapD
F4V73_RS01065 F4V73_RS01065 37.4 Morganella psychrotolerans - molecular chaperone
F4V73_RS05995 F4V73_RS05995 21.9 Morganella psychrotolerans - fimbria/pilus periplasmic chaperone
F4V73_RS09380 F4V73_RS09380 29.1 Morganella psychrotolerans - molecular chaperone
F4V73_RS10840 F4V73_RS10840 30.1 Morganella psychrotolerans - molecular chaperone

Distribution of the homologs in the orthogroup group_20

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_20

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P33409 9.15e-34 125 37 5 194 3 fimB Chaperone protein FimB/FhaD Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P33128 4.45e-31 118 31 9 241 1 yadV Probable fimbrial chaperone YadV Escherichia coli (strain K12)
P45991 6.87e-30 114 30 8 244 3 hifB Chaperone protein HifB Haemophilus influenzae
P35757 6.1e-29 112 30 8 240 3 hifB Chaperone protein HifB Haemophilus influenzae
P21646 4.44e-28 109 31 11 240 3 mrkB Chaperone protein MrkB Klebsiella pneumoniae
P33342 5.66e-27 107 32 5 185 2 yehC Probable fimbrial chaperone YehC Escherichia coli (strain K12)
P77249 2.44e-24 100 30 12 252 2 sfmC Probable fimbrial chaperone SfmC Escherichia coli (strain K12)
P43661 3.47e-23 97 31 9 242 3 lpfB Chaperone protein LpfB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8X5K6 3.02e-21 91 29 9 244 2 lpfB Probable fimbrial chaperone LpfB Escherichia coli O157:H7
P59590 1.46e-20 90 34 7 184 3 fimC Chaperone protein FimC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P75856 3.69e-20 89 32 8 207 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli (strain K12)
Q8X5E4 8.04e-20 88 31 8 207 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli O157:H7
P31697 9.63e-20 88 34 7 184 1 fimC Chaperone protein FimC Escherichia coli (strain K12)
P25402 1.62e-19 87 28 9 238 3 fanE Chaperone protein FanE Escherichia coli
P37923 3.23e-19 86 33 8 183 3 fimC Chaperone protein FimC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P62609 5.34e-19 85 28 9 249 1 focC Chaperone protein FocC Escherichia coli
P62610 5.34e-19 85 28 9 249 3 focC Chaperone protein FocC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P42914 2.97e-18 84 27 6 224 2 yraI Probable fimbrial chaperone YraI Escherichia coli (strain K12)
P40876 1.09e-17 82 33 5 186 2 ycbF Uncharacterized fimbrial chaperone YcbF Escherichia coli (strain K12)
P53520 1.14e-17 82 29 10 238 3 pmfD Chaperone protein PmfD Proteus mirabilis (strain HI4320)
P15319 1.94e-17 81 29 11 247 1 papD Chaperone protein PapD Escherichia coli
P75749 1.45e-16 79 25 9 240 3 ybgP Uncharacterized fimbrial chaperone YbgP Escherichia coli (strain K12)
P25401 1.95e-16 79 34 6 144 1 faeE Chaperone protein FaeE Escherichia coli
Q05433 2.72e-16 79 35 6 144 3 clpE Chaperone protein ClpE Escherichia coli
P69966 1.88e-14 74 26 10 250 3 psaB Chaperone protein PsaB Yersinia pseudotuberculosis serotype I (strain IP32953)
P69965 1.88e-14 74 26 10 250 3 psaB Chaperone protein PsaB Yersinia pestis
P77599 4.52e-13 70 27 8 221 2 yfcS Probable fimbrial chaperone YfcS Escherichia coli (strain K12)
P77616 9.75e-12 66 25 10 240 3 yqiH Uncharacterized fimbrial chaperone YqiH Escherichia coli (strain K12)
P53516 6.07e-11 63 28 5 200 3 afaB Chaperone protein AfaB Escherichia coli
P33407 7.37e-09 58 24 8 268 3 myfB Chaperone protein MyfB Yersinia enterocolitica
P15483 3.94e-08 55 25 6 235 3 None Chaperone protein CS3-1 Escherichia coli
P26926 9.27e-08 55 25 4 180 1 caf1M Chaperone protein caf1M Yersinia pestis
P46004 1.38e-07 54 30 3 126 3 aggD Chaperone protein AggD Escherichia coli
P46738 5.97e-07 52 27 5 200 3 nfaE Chaperone protein NfaE Escherichia coli
P33387 1.39e-05 48 26 8 192 3 sefB Chaperone protein SefB Salmonella enteritidis
P53519 8.36e-05 46 25 7 172 3 cssC Chaperone protein CssC Escherichia coli
P53518 0.000225 44 24 7 172 3 cssC Chaperone protein CssC Escherichia coli

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12585
Feature type CDS
Gene -
Product molecular chaperone
Location 111909 - 112640 (strand: -1)
Length 732 (nucleotides) / 243 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000003
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_20
Orthogroup size 15
N. genomes 6

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Genomic region

Domains

PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PF02753 Pili assembly chaperone PapD, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3121 Extracellular structures (W) W P pilus assembly protein, chaperone PapD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07346 fimbrial chaperone protein Two-component system -

Protein Sequence

MIAVFLSLVAIPATASIVITGTRFVYPSDDKEISINVENSGEKTALSQVWLTTGFSEKRTDKEVSKADIEDTPFVVLPPLFKIKPGNVQTVRILYTGEPLATDRESVFTLNVLDVPPKSKNIENSLQISVLSKFKFFYRPSAIAGDYNTAVDKIDWTITKQGSDIWLSAKNNSAFYITLDKARVITGGQEYDVQSGLAMMSPFGGITKAKISRLNTVPGQSAEIKFSYINDSGGSSDSVKIVN

Flanking regions ( +/- flanking 50bp)

GTCTTTAACTCATCATTATCCGAGTATATAAAACACGTATGATTAAAAAGATGATAGCTGTCTTTCTGTCGTTAGTGGCTATTCCGGCGACAGCCAGTATTGTGATAACCGGTACCCGGTTTGTATATCCTTCAGATGATAAGGAAATATCCATTAATGTTGAAAACAGCGGTGAAAAAACAGCACTGAGCCAGGTATGGCTGACAACAGGTTTCTCCGAAAAAAGAACAGATAAAGAAGTCTCAAAGGCAGATATTGAGGACACTCCGTTTGTTGTGCTGCCGCCATTATTTAAAATCAAGCCGGGTAATGTCCAGACAGTCCGTATTCTGTATACCGGTGAGCCGCTTGCAACCGATCGTGAAAGTGTTTTTACACTGAATGTTCTTGATGTCCCGCCTAAAAGTAAAAACATTGAAAACAGCTTGCAAATATCTGTTTTATCTAAATTTAAATTCTTTTACCGGCCTTCGGCTATTGCCGGTGATTACAATACAGCGGTTGATAAGATTGACTGGACAATAACAAAACAAGGTTCAGATATTTGGTTGTCAGCGAAAAATAACAGCGCCTTCTATATTACCCTTGATAAAGCCAGGGTTATTACCGGCGGGCAGGAATATGACGTACAGTCAGGTTTAGCCATGATGTCACCTTTCGGCGGAATAACTAAGGCAAAAATTAGCCGGTTAAATACCGTTCCGGGTCAGTCTGCGGAAATTAAATTTAGTTATATTAATGATTCAGGCGGCAGTTCAGATTCGGTTAAAATAGTAAATTAAGGTTATTGGGCTAATTTCATGAAAGGGTTTAATTATCTGCCGGTTATTTT