Orthogroup:group_1965


Homologs in group_1965

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14740 FBDBKF_14740 Morganella morganii S1 yceD 23S rRNA accumulation protein YceD
EHELCC_15545 EHELCC_15545 Morganella morganii S2 yceD 23S rRNA accumulation protein YceD
NLDBIP_16075 NLDBIP_16075 Morganella morganii S4 yceD 23S rRNA accumulation protein YceD
LHKJJB_15765 LHKJJB_15765 Morganella morganii S3 yceD 23S rRNA accumulation protein YceD
HKOGLL_14885 HKOGLL_14885 Morganella morganii S5 yceD 23S rRNA accumulation protein YceD
F4V73_RS07535 F4V73_RS07535 Morganella psychrotolerans yceD 23S rRNA accumulation protein YceD
PMI_RS04200 PMI_RS04200 Proteus mirabilis HI4320 yceD 23S rRNA accumulation protein YceD

Distribution of group_1965 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1965 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1965

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1965.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 yceD 7

Product

# Product Occurence
1 23S rRNA accumulation protein YceD 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1399 7 J Translation, ribosomal structure and biogenesis (J) 23S rRNA accumulation protein YceD (essential in plants, uncharacterized in bacteria)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07040 7 DUF177 domain-containing protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02620 7 Large ribosomal RNA subunit accumulation protein YceD

Annotations of the 6 SwissProt hits

Annotation Number of occurrences
Large ribosomal RNA subunit accumulation protein YceD 6

Protein length

Min length 174
Max length 177
Mean length (sd) 174.4 (1.1)
Median length 174.0

Protein length distribution