COG0082


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0082, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Chorismate synthase
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG0082 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1927 FBDBKF_14340 67728 68816 -1 aroC chorismate synthase Morganella morganii S1
1 group_1927 EHELCC_07940 48169 49257 1 aroC chorismate synthase Morganella morganii S2
2 group_1927 NLDBIP_08265 48169 49257 1 aroC chorismate synthase Morganella morganii S4
3 group_1927 LHKJJB_06000 207902 208990 -1 aroC chorismate synthase Morganella morganii S3
4 group_1927 HKOGLL_04915 32760 33848 1 aroC chorismate synthase Morganella morganii S5
5 group_1927 F4V73_RS02565 541775 542863 1 aroC chorismate synthase Morganella psychrotolerans
6 group_1927 PMI_RS08835 1931931 1933016 -1 aroC chorismate synthase Proteus mirabilis HI4320