Orthogroup:group_1908


Homologs in group_1908

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14225 FBDBKF_14225 Morganella morganii S1 yfcH NAD dependent epimerase/dehydratase family enzyme
EHELCC_08055 EHELCC_08055 Morganella morganii S2 yfcH NAD dependent epimerase/dehydratase family enzyme
NLDBIP_08380 NLDBIP_08380 Morganella morganii S4 yfcH NAD dependent epimerase/dehydratase family enzyme
LHKJJB_05885 LHKJJB_05885 Morganella morganii S3 yfcH NAD dependent epimerase/dehydratase family enzyme
HKOGLL_05030 HKOGLL_05030 Morganella morganii S5 yfcH NAD dependent epimerase/dehydratase family enzyme
F4V73_RS02685 F4V73_RS02685 Morganella psychrotolerans - TIGR01777 family oxidoreductase
PMI_RS08735 PMI_RS08735 Proteus mirabilis HI4320 - TIGR01777 family oxidoreductase

Distribution of group_1908 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1908 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1908

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1908.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 yfcH 5
2 - 2

Product

# Product Occurence
1 NAD dependent epimerase/dehydratase family enzyme 5
2 TIGR01777 family oxidoreductase 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1090 7 R General function prediction only (R) NAD dependent epimerase/dehydratase family enzyme

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07071 7 uncharacterized protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01370 7 NAD dependent epimerase/dehydratase family
PF08338 7 Domain of unknown function (DUF1731)

Annotations of the 31 SwissProt hits

Annotation Number of occurrences
ADP-L-glycero-D-manno-heptose-6-epimerase 1
Epimerase family protein HI_1208 1
Epimerase family protein ML0860 1
Epimerase family protein MT2273 1
Epimerase family protein MW0731 1
Epimerase family protein Mb2239 1
Epimerase family protein Rv2216 1
Epimerase family protein SA0724 1
Epimerase family protein SAB0724c 1
Epimerase family protein SACOL0834 1
Epimerase family protein SAOUHSC_00792 1
Epimerase family protein SAR0825 1
Epimerase family protein SAS0734 1
Epimerase family protein SAUSA300_0753 1
Epimerase family protein SAV0769 1
Epimerase family protein SDR39U1 3
Epimerase family protein SDR39U1 homolog, chloroplastic 1
Epimerase family protein SERP0438 1
Epimerase family protein SE_0553 1
Epimerase family protein SH2119 1
Epimerase family protein SSP1921 1
Epimerase family protein YfcH 1
Epimerase family protein YfhF 1
Epimerase family protein slr1223 1
Protein Rcp 1
Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating 1
Uncharacterized protein C2A9.02 1
dTDP-4-dehydro-6-deoxy-D-allose reductase 2

Protein length

Min length 301
Max length 303
Mean length (sd) 302.7 (0.8)
Median length 303.0

Protein length distribution