Orthogroup:group_1827


Homologs in group_1827

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_13530 FBDBKF_13530 Morganella morganii S1 ldcB LD-carboxypeptidase LdcB, LAS superfamily
EHELCC_08565 EHELCC_08565 Morganella morganii S2 ldcB LD-carboxypeptidase LdcB, LAS superfamily
NLDBIP_08890 NLDBIP_08890 Morganella morganii S4 ldcB LD-carboxypeptidase LdcB, LAS superfamily
LHKJJB_05375 LHKJJB_05375 Morganella morganii S3 ldcB LD-carboxypeptidase LdcB, LAS superfamily
HKOGLL_05540 HKOGLL_05540 Morganella morganii S5 ldcB LD-carboxypeptidase LdcB, LAS superfamily
F4V73_RS03230 F4V73_RS03230 Morganella psychrotolerans - M15 family metallopeptidase
PMI_RS07580 PMI_RS07580 Proteus mirabilis HI4320 - M15 family metallopeptidase

Distribution of group_1827 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1827 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1827

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1827.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ldcB 5
2 - 2

Product

# Product Occurence
1 LD-carboxypeptidase LdcB, LAS superfamily 5
2 M15 family metallopeptidase 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1876 7 M Cell wall/membrane/envelope biogenesis (M) LD-carboxypeptidase LdcB, LAS superfamily

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07260 7 zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] Peptidoglycan biosynthesis
Metabolic pathways
Vancomycin resistance
Two-component system		 Vancomycin resistance, D-Ala-D-Lac type

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02557 7 D-alanyl-D-alanine carboxypeptidase

Annotations of the 4 SwissProt hits

Annotation Number of occurrences
D-alanyl-D-alanine carboxypeptidase 1
Putative carboxypeptidase YodJ 1
Uncharacterized protein HI_0100 1
Uncharacterized protein HI_0101 1

Protein length

Min length 222
Max length 228
Mean length (sd) 225.0 (1.7)
Median length 225.0

Protein length distribution