Homologs in group_1827

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13185 FBDBKF_13185 57.9 Morganella morganii S1 - DNA primase
EHELCC_08910 EHELCC_08910 57.9 Morganella morganii S2 - DNA primase
NLDBIP_09235 NLDBIP_09235 57.9 Morganella morganii S4 - DNA primase
LHKJJB_05030 LHKJJB_05030 57.9 Morganella morganii S3 - DNA primase
HKOGLL_05885 HKOGLL_05885 57.9 Morganella morganii S5 - DNA primase
PMI_RS12055 PMI_RS12055 30.0 Proteus mirabilis HI4320 - primase-helicase zinc-binding domain-containing protein

Distribution of the homologs in the orthogroup group_1827

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1827

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P10277 1.96e-06 53 37 2 67 1 Alpha Putative P4-specific DNA primase Enterobacteria phage P4

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS02030
Feature type CDS
Gene -
Product toprim domain-containing protein
Location 438929 - 439894 (strand: 1)
Length 966 (nucleotides) / 321 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1827
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF08273 Zinc-binding domain of primase-helicase
PF13362 Toprim domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4643 Mobilome: prophages, transposons (X) X Uncharacterized domain associated with phage/plasmid primase

Protein Sequence

MNTKEAAQGQWDKIFSHYGLPPVTGKKHFKGKCPLCGRRGKFRIDDKDGRGTYICVCSAGTGFQLLERSRKKNFRELSDEVDQLLGRVHSRGTYQTEAITATGTRDRVLNQFNNLSDIPGTSAQAYLRSRGISRLPEQYVRFCDKPPAGNDMDTRHCQSLWALATDGKNRVCYLHRTFFTGSSVIRRMTALQSKSYLEYADSVAIKLFPAAATLGIAEGIETALSCKQIYGVNTWSVMNAGFMGKFVAPRGIGHLIIFADTDNSAAGHAAAFTCARRNLSAGNDVMTVCVRWPDEGDFNDVLHTGGEVRQITFSRQTRGIA

Flanking regions ( +/- flanking 50bp)

AAACGGTCTTATTCTGGCTGGGTAATATTTCACAAAGCAGGGAGCTGAGCGTGAATACAAAGGAAGCAGCACAAGGACAGTGGGACAAAATATTCAGCCATTATGGTTTGCCGCCGGTTACCGGAAAAAAGCATTTCAAAGGAAAATGTCCGTTGTGCGGGAGACGCGGTAAATTTCGCATTGACGATAAAGACGGGCGTGGAACCTACATTTGCGTGTGCAGTGCCGGAACCGGTTTTCAATTGCTTGAGCGCAGCCGGAAAAAAAACTTCAGGGAACTGTCGGATGAAGTGGATCAGCTGCTTGGTCGCGTTCATAGCCGGGGGACTTATCAGACAGAAGCGATTACCGCAACCGGTACACGGGATCGTGTTCTCAACCAGTTCAATAATCTGTCTGATATACCGGGTACATCTGCGCAAGCGTATCTGCGGTCCCGGGGGATCAGCCGGTTACCTGAACAGTATGTCCGGTTTTGTGATAAACCGCCTGCCGGTAATGATATGGATACCCGGCATTGTCAGTCACTGTGGGCGCTGGCAACAGACGGAAAAAACCGGGTGTGTTATCTGCACCGGACTTTTTTCACAGGTAGTTCAGTCATAAGGCGCATGACTGCACTCCAGAGCAAATCATATCTTGAGTATGCGGACTCAGTGGCGATCAAACTGTTTCCGGCTGCCGCGACTCTGGGTATTGCGGAAGGCATTGAAACAGCACTGTCCTGCAAACAGATTTACGGGGTGAATACATGGTCAGTCATGAATGCGGGCTTTATGGGTAAATTTGTTGCCCCCCGGGGGATCGGCCATCTGATTATTTTTGCCGATACAGATAACAGTGCTGCCGGTCATGCAGCGGCATTCACCTGCGCCAGGCGTAATTTATCGGCAGGAAATGATGTGATGACGGTCTGTGTCCGCTGGCCGGATGAAGGGGATTTTAATGATGTTCTCCATACGGGCGGCGAAGTCAGGCAGATAACATTTTCCCGTCAGACGAGGGGAATTGCCTGATGAAATCTGAATACCTGTTAAAAGCGTTTTCACCTTCATCCGTCAGCCTG