COG4643


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4643, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized domain associated with phage/plasmid primase
Function(s) descr. Mobilome: prophages, transposons (X)

Occurence in the database

COG4643 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1790 FBDBKF_13185 26227 27213 -1 DNA primase Morganella morganii S1
1 group_1790 EHELCC_08910 247978 248964 1 DNA primase Morganella morganii S2
2 group_1790 NLDBIP_09235 247978 248964 1 DNA primase Morganella morganii S4
3 group_1790 LHKJJB_05030 8195 9181 -1 DNA primase Morganella morganii S3
4 group_1790 HKOGLL_05885 232569 233555 1 DNA primase Morganella morganii S5
5 group_1790 F4V73_RS02030 438929 439894 1 toprim domain-containing protein Morganella psychrotolerans
6 group_1790 PMI_RS12055 2667172 2668245 -1 primase-helicase zinc-binding domain-containing protein Proteus mirabilis HI4320