Orthogroup:group_1709



Homologs in group_1709

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_11910 FBDBKF_11910 Morganella morganii S1 idi isopentenyl-diphosphate Delta-isomerase
EHELCC_14395 EHELCC_14395 Morganella morganii S2 idi isopentenyl-diphosphate Delta-isomerase
NLDBIP_15490 NLDBIP_15490 Morganella morganii S4 idi isopentenyl-diphosphate Delta-isomerase
LHKJJB_15120 LHKJJB_15120 Morganella morganii S3 idi isopentenyl-diphosphate Delta-isomerase
HKOGLL_14240 HKOGLL_14240 Morganella morganii S5 idi isopentenyl-diphosphate Delta-isomerase
F4V73_RS14745 F4V73_RS14745 Morganella psychrotolerans idi isopentenyl-diphosphate Delta-isomerase
PMI_RS13640 PMI_RS13640 Proteus mirabilis HI4320 idi isopentenyl-diphosphate Delta-isomerase

Distribution of group_1709 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1709 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1709

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1709.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 idi 7

Product

# Product Occurence
1 isopentenyl-diphosphate Delta-isomerase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1443 7 I Lipid transport and metabolism (I) Isopentenyldiphosphate isomerase

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00293 7 NUDIX domain

Annotations of the 126 SwissProt hits

Annotation Number of occurrences
Isopentenyl-diphosphate Delta-isomerase 91
Isopentenyl-diphosphate Delta-isomerase 1 9
Isopentenyl-diphosphate Delta-isomerase 1, chloroplastic 1
Isopentenyl-diphosphate Delta-isomerase 2 2
Isopentenyl-diphosphate Delta-isomerase I 2
Isopentenyl-diphosphate Delta-isomerase I, chloroplastic 1
Isopentenyl-diphosphate Delta-isomerase II 3
Isopentenyl-diphosphate Delta-isomerase II, chloroplastic 1
Isopentenyl-diphosphate delta-isomerase 4
Isopentenyl-diphosphate delta-isomerase 2 2
Isopentenyl-diphosphate delta-isomerase IDI1 1
Isopentenyl-diphosphate delta-isomerase idi1 1
Nudix hydrolase 3 1
Prenyl-diphosphate phosphatase 1
Uncharacterized Nudix hydrolase CA_C0446 1
Uncharacterized Nudix hydrolase PA4841 1
Uncharacterized Nudix hydrolase YPO2781/y1614/YP_2383 1
Uncharacterized Nudix hydrolase all7351 1
Uncharacterized Nudix hydrolase lin0387 1
Uncharacterized Nudix hydrolase lmo0368 1

Protein length

Min length 173
Max length 178
Mean length (sd) 174.4 (2.4)
Median length 173.0

Protein length distribution