Orthogroup:group_1629


Homologs in group_1629

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_10730 FBDBKF_10730 Morganella morganii S1 tex Transcriptional accessory protein Tex/SPT6
EHELCC_15065 EHELCC_15065 Morganella morganii S2 tex Transcriptional accessory protein Tex/SPT6
NLDBIP_14895 NLDBIP_14895 Morganella morganii S4 tex Transcriptional accessory protein Tex/SPT6
LHKJJB_14450 LHKJJB_14450 Morganella morganii S3 tex Transcriptional accessory protein Tex/SPT6
HKOGLL_13070 HKOGLL_13070 Morganella morganii S5 tex Transcriptional accessory protein Tex/SPT6
F4V73_RS14445 F4V73_RS14445 Morganella psychrotolerans - Tex family protein
PMI_RS14280 PMI_RS14280 Proteus mirabilis HI4320 - Tex family protein

Distribution of group_1629 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1629 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1629

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1629.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tex 5
2 - 2

Product

# Product Occurence
1 Transcriptional accessory protein Tex/SPT6 5
2 Tex family protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2183 7 K Transcription (K) Transcriptional accessory protein Tex/SPT6

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06959 7 protein Tex - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00575 7 S1 RNA binding domain
PF09371 7 Tex-like protein N-terminal domain
PF12836 7 Helix-hairpin-helix motif
PF16921 7 Tex protein YqgF-like domain
PF17674 7 HHH domain
PF22706 7 Tex central region-like

Annotations of the 557 SwissProt hits

Annotation Number of occurrences
4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2
ComE operon protein 1 1
General stress protein 13 1
Polyprotein of EF-Ts, chloroplastic 4
Polyribonucleotide nucleotidyltransferase 449
Polyribonucleotide nucleotidyltransferase 1 1
Polyribonucleotide nucleotidyltransferase 1, chloroplastic 1
Polyribonucleotide nucleotidyltransferase 2 1
Polyribonucleotide nucleotidyltransferase 3 1
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 1
Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 1
Protein RRP5 homolog 2
Protein YhgF 1
Protein tex 1
Ribonuclease R 3
S1 RNA-binding domain-containing protein 1 3
Small ribosomal subunit protein bS1 40
Small ribosomal subunit protein bS1 (Fragment) 1
Small ribosomal subunit protein bS1 homolog 2
Small ribosomal subunit protein bS1A 1
Small ribosomal subunit protein bS1B 1
Small ribosomal subunit protein bS1c 4
Suppressor of Ty 6 homolog 2
Transcription elongation factor SPT6 14
Transcription elongation factor SPT6 homolog 1
Transcription elongation factor SPT6-like 1
Transcription elongation factor spt-6 1
Transcription elongation factor spt6 4
Transcriptional accessory protein Tex 1
Translation initiation factor 2 subunit alpha 2
Uncharacterized protein HI_0568 1
Uncharacterized protein NMA0194 1
Uncharacterized protein NMB0075 1
Uncharacterized protein YabR 1
Uncharacterized protein YdcI 1
Zinc finger CCHC domain-containing protein 17 2
rRNA biogenesis protein RRP5 2

Protein length

Min length 776
Max length 777
Mean length (sd) 776.1 (0.4)
Median length 776.0

Protein length distribution