Orthogroup:group_1470


Homologs in group_1470

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_09430 FBDBKF_09430 Morganella morganii S1 yidZ HTH-type transcriptional regulator YidZ
EHELCC_09980 EHELCC_09980 Morganella morganii S2 yidZ HTH-type transcriptional regulator YidZ
NLDBIP_10325 NLDBIP_10325 Morganella morganii S4 yidZ HTH-type transcriptional regulator YidZ
LHKJJB_11030 LHKJJB_11030 Morganella morganii S3 yidZ HTH-type transcriptional regulator YidZ
HKOGLL_14090 HKOGLL_14090 Morganella morganii S5 yidZ HTH-type transcriptional regulator YidZ
F4V73_RS10480 F4V73_RS10480 Morganella psychrotolerans yidZ HTH-type transcriptional regulator YidZ
PMI_RS06085 PMI_RS06085 Proteus mirabilis HI4320 yidZ HTH-type transcriptional regulator YidZ

Distribution of group_1470 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1470 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1470

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1470.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 yidZ 7

Product

# Product Occurence
1 HTH-type transcriptional regulator YidZ 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0583 7 K Transcription (K) DNA-binding transcriptional regulator, LysR family

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00126 7 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 7 LysR substrate binding domain

Annotations of the 68 SwissProt hits

Annotation Number of occurrences
HTH-type transcriptional activator AmpR 1
HTH-type transcriptional activator NagR 1
HTH-type transcriptional activator NahR 1
HTH-type transcriptional regulator ArgP 1
HTH-type transcriptional regulator LeuO 1
HTH-type transcriptional regulator LinR 1
HTH-type transcriptional regulator PgrR 1
HTH-type transcriptional regulator PhcA 1
HTH-type transcriptional regulator SyrM 2
HTH-type transcriptional regulator SyrM 1 1
HTH-type transcriptional regulator SyrM 2 1
HTH-type transcriptional regulator YidZ 26
Nodulation protein D 4
Nodulation protein D 1 10
Nodulation protein D 2 7
Nodulation protein D 3 2
PCP degradation transcriptional activation protein 1
Probable HTH-type transcriptional regulator LeuO 1
Uncharacterized HTH-type transcriptional regulator MJ0300 1
Uncharacterized HTH-type transcriptional regulator YbdO 1
Uncharacterized HTH-type transcriptional regulator YbeF 1
Uncharacterized HTH-type transcriptional regulator YdcI 1
Uncharacterized HTH-type transcriptional regulator YkuM 1

Protein length

Min length 321
Max length 323
Mean length (sd) 321.3 (0.8)
Median length 321.0

Protein length distribution