Orthogroup:group_1350



Homologs in group_1350

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08365 FBDBKF_08365 Morganella morganii S1 uvrD DNA helicase II
EHELCC_13160 EHELCC_13160 Morganella morganii S2 uvrD DNA helicase II
NLDBIP_13500 NLDBIP_13500 Morganella morganii S4 uvrD DNA helicase II
LHKJJB_13055 LHKJJB_13055 Morganella morganii S3 uvrD DNA helicase II
HKOGLL_11975 HKOGLL_11975 Morganella morganii S5 uvrD DNA helicase II
F4V73_RS09565 F4V73_RS09565 Morganella psychrotolerans uvrD DNA helicase II
PMI_RS16615 PMI_RS16615 Proteus mirabilis HI4320 uvrD DNA helicase II

Distribution of group_1350 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1350 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1350

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1350.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 uvrD 7

Product

# Product Occurence
1 DNA helicase II 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0210 7 L Replication, recombination and repair (L) Superfamily I DNA or RNA helicase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03657 7 ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] Nucleotide excision repair
Mismatch repair
-

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00580 7 UvrD/REP helicase N-terminal domain
PF13361 7 UvrD-like helicase C-terminal domain
PF21196 7 PcrA/UvrD tudor domain

Annotations of the 197 SwissProt hits

Annotation Number of occurrences
ATP-dependent DNA helicase HMI1, mitochondrial 1
ATP-dependent DNA helicase PcrA 12
ATP-dependent DNA helicase Rep 6
ATP-dependent DNA helicase SRS2 1
ATP-dependent DNA helicase SRS2-like protein At4g25120 1
ATP-dependent DNA helicase UvrD1 4
ATP-dependent DNA helicase UvrD2 4
ATP-dependent DNA helicase srs2 1
ATP-dependent helicase/nuclease subunit A 138
DNA helicase II 4
DNA helicase IV 1
Exonuclease/helicase subunit RexA 2
Gabija protein GajB 1
PCNA-interacting partner 1
Probable DNA helicase II homolog 7
Probable DNA helicase MPN_340 1
Putative ATP-dependent DNA helicase YjcD 1
RecBCD enzyme subunit RecB 11

Protein length

Min length 718
Max length 723
Mean length (sd) 720.1 (1.5)
Median length 720.0

Protein length distribution