Orthogroup:group_1325


Homologs in group_1325

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08205 FBDBKF_08205 Morganella morganii S1 rhlB ATP-dependent RNA helicase RhlB
EHELCC_13320 EHELCC_13320 Morganella morganii S2 rhlB ATP-dependent RNA helicase RhlB
NLDBIP_13660 NLDBIP_13660 Morganella morganii S4 rhlB ATP-dependent RNA helicase RhlB
LHKJJB_12895 LHKJJB_12895 Morganella morganii S3 rhlB ATP-dependent RNA helicase RhlB
HKOGLL_12135 HKOGLL_12135 Morganella morganii S5 rhlB ATP-dependent RNA helicase RhlB
F4V73_RS18755 F4V73_RS18755 Morganella psychrotolerans rhlB ATP-dependent RNA helicase RhlB
PMI_RS16465 PMI_RS16465 Proteus mirabilis HI4320 rhlB ATP-dependent RNA helicase RhlB

Distribution of group_1325 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1325 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1325

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1325.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rhlB 7

Product

# Product Occurence
1 ATP-dependent RNA helicase RhlB 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0513 7 L Replication, recombination and repair (L) Superfamily II DNA and RNA helicase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03732 7 ATP-dependent RNA helicase RhlB [EC:3.6.4.13] RNA degradation -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00270 7 DEAD/DEAH box helicase
PF00271 7 Helicase conserved C-terminal domain

Annotations of the 534 SwissProt hits

Annotation Number of occurrences
ATP-dependent RNA helicase CshA 2
ATP-dependent RNA helicase DBP1 3
ATP-dependent RNA helicase DBP10 8
ATP-dependent RNA helicase DBP2 19
ATP-dependent RNA helicase DBP2-A 2
ATP-dependent RNA helicase DBP3 20
ATP-dependent RNA helicase DDX3X 2
ATP-dependent RNA helicase DDX3Y 4
ATP-dependent RNA helicase DDX4 1
ATP-dependent RNA helicase DDX42 5
ATP-dependent RNA helicase DDX47 1
ATP-dependent RNA helicase DDX54 2
ATP-dependent RNA helicase DED1 19
ATP-dependent RNA helicase DHH1 10
ATP-dependent RNA helicase DRS1 16
ATP-dependent RNA helicase DbpA 4
ATP-dependent RNA helicase DeaD 11
ATP-dependent RNA helicase FAL1 9
ATP-dependent RNA helicase HAS1 2
ATP-dependent RNA helicase RhlB 121
ATP-dependent RNA helicase RhlE 1
ATP-dependent RNA helicase SrmB 2
ATP-dependent RNA helicase abstrakt 1
ATP-dependent RNA helicase bel 1
ATP-dependent RNA helicase dbp-10 1
ATP-dependent RNA helicase dbp-3 1
ATP-dependent RNA helicase dbp10 9
ATP-dependent RNA helicase dbp2 10
ATP-dependent RNA helicase dbp3 10
ATP-dependent RNA helicase ddx23 1
ATP-dependent RNA helicase ddx46 1
ATP-dependent RNA helicase ded1 13
ATP-dependent RNA helicase dhh1 6
ATP-dependent RNA helicase drs1 9
ATP-dependent RNA helicase fal-1 1
ATP-dependent RNA helicase fal1 9
ATP-dependent RNA helicase laf-1 1
ATP-dependent RNA helicase p62 1
ATP-dependent RNA helicase vasa 1
ATP-dependent RNA helicase-like protein DB10 1
ATP-dependent rRNA helicase RRP3 21
ATP-dependent rRNA helicase rrp-3 1
ATP-dependent rRNA helicase rrp3 10
DEAD-box ATP-dependent RNA helicase 10 3
DEAD-box ATP-dependent RNA helicase 11 1
DEAD-box ATP-dependent RNA helicase 14 2
DEAD-box ATP-dependent RNA helicase 20 2
DEAD-box ATP-dependent RNA helicase 21 2
DEAD-box ATP-dependent RNA helicase 24 2
DEAD-box ATP-dependent RNA helicase 28 2
DEAD-box ATP-dependent RNA helicase 29 2
DEAD-box ATP-dependent RNA helicase 3, chloroplastic 2
DEAD-box ATP-dependent RNA helicase 30 2
DEAD-box ATP-dependent RNA helicase 35 1
DEAD-box ATP-dependent RNA helicase 35A 1
DEAD-box ATP-dependent RNA helicase 37 2
DEAD-box ATP-dependent RNA helicase 3A, chloroplastic 1
DEAD-box ATP-dependent RNA helicase 3B, chloroplastic 1
DEAD-box ATP-dependent RNA helicase 40 2
DEAD-box ATP-dependent RNA helicase 42 2
DEAD-box ATP-dependent RNA helicase 46 1
DEAD-box ATP-dependent RNA helicase 5 2
DEAD-box ATP-dependent RNA helicase 52 1
DEAD-box ATP-dependent RNA helicase 52A 1
DEAD-box ATP-dependent RNA helicase 52B 1
DEAD-box ATP-dependent RNA helicase 52C 1
DEAD-box ATP-dependent RNA helicase 53 1
DEAD-box ATP-dependent RNA helicase 53, mitochondrial 1
DEAD-box ATP-dependent RNA helicase 7 2
DEAD-box ATP-dependent RNA helicase 9 1
DEAD-box ATP-dependent RNA helicase 9, mitochondrial 1
DEAD-box ATP-dependent RNA helicase CshA 24
DEAD-box ATP-dependent RNA helicase CshB 4
DEAD-box ATP-dependent RNA helicase CshE 1
DEAD-box ATP-dependent RNA helicase RhpA 2
Eukaryotic initiation factor 4A 1
Eukaryotic initiation factor 4A-III 12
Eukaryotic initiation factor 4A-III-A 1
Eukaryotic initiation factor 4A-III-B 1
Pre-mRNA-processing ATP-dependent RNA helicase PRP5 6
Pre-mRNA-processing ATP-dependent RNA helicase prp-5 1
Pre-mRNA-processing ATP-dependent RNA helicase prp11 1
Pre-mRNA-processing ATP-dependent RNA helicase prp5 9
Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 7
Pre-mRNA-splicing ATP-dependent RNA helicase prp28 5
Probable ATP-dependent RNA helicase DDX17 2
Probable ATP-dependent RNA helicase DDX23 2
Probable ATP-dependent RNA helicase DDX27 3
Probable ATP-dependent RNA helicase DDX4 7
Probable ATP-dependent RNA helicase DDX41 2
Probable ATP-dependent RNA helicase DDX43 1
Probable ATP-dependent RNA helicase DDX46 5
Probable ATP-dependent RNA helicase DDX47 3
Probable ATP-dependent RNA helicase DDX5 5
Probable ATP-dependent RNA helicase DDX53 1
Probable ATP-dependent RNA helicase MJ0669 1
Probable ATP-dependent RNA helicase ddx17 1
Probable ATP-dependent RNA helicase ddx3 1
Probable ATP-dependent RNA helicase ddx42 1
Probable ATP-dependent RNA helicase ddx47 1
Probable ATP-dependent RNA helicase vasa-like 1
Putative ATP-dependent RNA helicase Pl10 1
Putative ATP-dependent RNA helicase T26G10.1 1
Putative ATP-dependent RNA helicase an3 1
Putative DEAD-box ATP-dependent RNA helicase 43 1
Putative DEAD-box RNA helicase HEL64 1
RNA helicase CrhR 1

Protein length

Min length 431
Max length 432
Mean length (sd) 431.1 (0.4)
Median length 431.0

Protein length distribution