Orthogroup:group_1230


Homologs in group_1230

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07165 FBDBKF_07165 Morganella morganii S1 ihfB integration host factor subunit beta
EHELCC_03805 EHELCC_03805 Morganella morganii S2 ihfB integration host factor subunit beta
NLDBIP_03805 NLDBIP_03805 Morganella morganii S4 ihfB integration host factor subunit beta
LHKJJB_09635 LHKJJB_09635 Morganella morganii S3 ihfB integration host factor subunit beta
HKOGLL_09340 HKOGLL_09340 Morganella morganii S5 ihfB integration host factor subunit beta
F4V73_RS01350 F4V73_RS01350 Morganella psychrotolerans ihfB integration host factor subunit beta
PMI_RS03520 PMI_RS03520 Proteus mirabilis HI4320 ihfB integration host factor subunit beta

Distribution of group_1230 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1230 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1230

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1230.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ihfB 7

Product

# Product Occurence
1 integration host factor subunit beta 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0776 7 L Replication, recombination and repair (L) Bacterial nucleoid DNA-binding protein IHF-alpha

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K05788 7 integration host factor subunit beta - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00216 7 Bacterial DNA-binding protein

Annotations of the 525 SwissProt hits

Annotation Number of occurrences
DNA-binding protein HBbu 2
DNA-binding protein HRL53 1
DNA-binding protein HRm 1
DNA-binding protein HU 36
DNA-binding protein HU 1 1
DNA-binding protein HU 2 1
DNA-binding protein HU homolog 1
DNA-binding protein HU-1 2
DNA-binding protein HU-alpha 14
DNA-binding protein HU-beta 12
DNA-binding protein HU-beta 2 1
Integration host factor subunit alpha 189
Integration host factor subunit alpha (Fragment) 1
Integration host factor subunit beta 262
SPbeta prophage-derived DNA-binding protein HU 2 1

Protein length

Min length 94
Max length 95
Mean length (sd) 94.1 (0.4)
Median length 94.0

Protein length distribution