Orthogroup:group_1223



Homologs in group_1223

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07115 FBDBKF_07115 Morganella morganii S1 serS serine--tRNA ligase
EHELCC_03855 EHELCC_03855 Morganella morganii S2 serS serine--tRNA ligase
NLDBIP_03855 NLDBIP_03855 Morganella morganii S4 serS serine--tRNA ligase
LHKJJB_09685 LHKJJB_09685 Morganella morganii S3 serS serine--tRNA ligase
HKOGLL_09290 HKOGLL_09290 Morganella morganii S5 serS serine--tRNA ligase
F4V73_RS01300 F4V73_RS01300 Morganella psychrotolerans serS serine--tRNA ligase
PMI_RS03445 PMI_RS03445 Proteus mirabilis HI4320 serS serine--tRNA ligase

Distribution of group_1223 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1223 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1223

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1223.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 serS 7

Product

# Product Occurence
1 serine--tRNA ligase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0172 7 J Translation, ribosomal structure and biogenesis (J) Seryl-tRNA synthetase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01875 7 seryl-tRNA synthetase [EC:6.1.1.11] Aminoacyl-tRNA biosynthesis -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00587 7 tRNA synthetase class II core domain (G, H, P, S and T)
PF02403 7 Seryl-tRNA synthetase N-terminal domain

Annotations of the 516 SwissProt hits

Annotation Number of occurrences
Serine--tRNA ligase 512
Serine--tRNA ligase 1 3
Serine--tRNA ligase 2 1

Protein length

Min length 429
Max length 430
Mean length (sd) 429.9 (0.4)
Median length 430.0

Protein length distribution