Orthogroup:group_1222


Homologs in group_1222

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07110 FBDBKF_07110 Morganella morganii S1 rarA Replication-associated recombination protein RarA (DNA-dependent ATPase)
EHELCC_03860 EHELCC_03860 Morganella morganii S2 rarA Replication-associated recombination protein RarA (DNA-dependent ATPase)
NLDBIP_03860 NLDBIP_03860 Morganella morganii S4 rarA Replication-associated recombination protein RarA (DNA-dependent ATPase)
LHKJJB_09690 LHKJJB_09690 Morganella morganii S3 rarA Replication-associated recombination protein RarA (DNA-dependent ATPase)
HKOGLL_09285 HKOGLL_09285 Morganella morganii S5 rarA Replication-associated recombination protein RarA (DNA-dependent ATPase)
F4V73_RS01295 F4V73_RS01295 Morganella psychrotolerans - replication-associated recombination protein A
PMI_RS03440 PMI_RS03440 Proteus mirabilis HI4320 - replication-associated recombination protein A

Distribution of group_1222 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1222 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1222

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1222.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rarA 5
2 - 2

Product

# Product Occurence
1 Replication-associated recombination protein RarA (DNA-dependent ATPase) 5
2 replication-associated recombination protein A 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2256 7 L Replication, recombination and repair (L) Replication-associated recombination protein RarA (DNA-dependent ATPase)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07478 7 putative ATPase - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00004 6 ATPase family associated with various cellular activities (AAA)
PF05496 1 Holliday junction DNA helicase RuvB P-loop domain
PF12002 7 MgsA AAA+ ATPase C terminal
PF16193 7 AAA C-terminal domain

Annotations of the 538 SwissProt hits

Annotation Number of occurrences
ATPase WRNIP1 4
ATPase WRNIP1 homolog C26H5.02c 1
DNA polymerase III subunit gamma 2
DNA polymerase III subunit tau 2
DNA polymerase III subunit tau/gamma 1
DNA-dependent ATPase MGS1 1
Holliday junction branch migration complex subunit RuvB 510
Replication factor C large subunit 1
Replication factor C small subunit 4
Replication factor C subunit 3 3
Replication-associated recombination protein A 5
Uncharacterized AAA domain-containing protein MT2636 1
Uncharacterized AAA domain-containing protein Rv2559c 1
Uncharacterized AAA domain-containing protein YrvN 1
Uncharacterized protein TM_0508 1

Protein length

Min length 447
Max length 449
Mean length (sd) 447.3 (0.8)
Median length 447.0

Protein length distribution