Orthogroup:group_1120


Homologs in group_1120

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06385 FBDBKF_06385 Morganella morganii S1 pcnB multifunctional CCA addition/repair protein
EHELCC_09430 EHELCC_09430 Morganella morganii S2 pcnB multifunctional CCA addition/repair protein
NLDBIP_09810 NLDBIP_09810 Morganella morganii S4 pcnB multifunctional CCA addition/repair protein
LHKJJB_07945 LHKJJB_07945 Morganella morganii S3 pcnB multifunctional CCA addition/repair protein
HKOGLL_07495 HKOGLL_07495 Morganella morganii S5 pcnB multifunctional CCA addition/repair protein
F4V73_RS15540 F4V73_RS15540 Morganella psychrotolerans - multifunctional CCA addition/repair protein
PMI_RS11680 PMI_RS11680 Proteus mirabilis HI4320 - multifunctional CCA addition/repair protein

Distribution of group_1120 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1120 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1120

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1120.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 pcnB 5
2 - 2

Product

# Product Occurence
1 multifunctional CCA addition/repair protein 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0617 7 J Translation, ribosomal structure and biogenesis (J) tRNA nucleotidyltransferase/poly(A) polymerase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K00974 1 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01743 7 Poly A polymerase head domain
PF01966 1 HD domain
PF12627 7 Probable RNA and SrmB- binding site of polymerase A

Annotations of the 345 SwissProt hits

Annotation Number of occurrences
A-adding tRNA nucleotidyltransferase 5
CC-adding tRNA nucleotidyltransferase 7
CCA tRNA nucleotidyltransferase (Fragment) 1
CCA tRNA nucleotidyltransferase 1, mitochondrial 3
CCA tRNA nucleotidyltransferase, mitochondrial 2
CCA-adding enzyme 121
CCA-adding enzyme (Fragment) 1
Multifunctional CCA protein 196
Nucleotidyltransferase lcsQ 1
Poly(A) polymerase I 6
tRNA nucleotidyltransferase cca1 1
tRNA nucleotidyltransferase cca2 1

Protein length

Min length 391
Max length 407
Mean length (sd) 394.7 (5.5)
Median length 393.0

Protein length distribution