Homologs in group_1120

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05965 FBDBKF_05965 100.0 Morganella morganii S1 - Chaperone protein Skp
EHELCC_09010 EHELCC_09010 100.0 Morganella morganii S2 - Chaperone protein Skp
LHKJJB_08365 LHKJJB_08365 100.0 Morganella morganii S3 - Chaperone protein Skp
HKOGLL_07915 HKOGLL_07915 100.0 Morganella morganii S5 - Chaperone protein Skp
F4V73_RS15930 F4V73_RS15930 97.6 Morganella psychrotolerans - OmpH family outer membrane protein
PMI_RS11240 PMI_RS11240 62.4 Proteus mirabilis HI4320 - OmpH family outer membrane protein

Distribution of the homologs in the orthogroup group_1120

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1120

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9S340 9.31e-76 226 67 1 166 3 skp Chaperone protein Skp Photorhabdus luminescens
Q7N8N8 8.14e-75 224 66 1 166 3 skp Chaperone protein Skp Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
P31520 5.3e-65 199 66 0 145 3 skp Chaperone protein Skp Yersinia pseudotuberculosis serotype I (strain IP32953)
P58607 5.3e-65 199 66 0 145 3 skp Chaperone protein Skp Yersinia pestis
P31519 3.15e-60 187 64 0 143 2 skp Chaperone protein Skp Yersinia enterocolitica
Q6D8D4 4.77e-60 186 61 1 166 3 skp Chaperone protein Skp Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
P0A1Z2 3.57e-43 143 49 4 168 1 skp Chaperone protein Skp Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1Z3 3.57e-43 143 49 4 168 3 skp Chaperone protein Skp Salmonella typhi
Q5PD64 3.57e-43 143 49 4 168 3 skp Chaperone protein Skp Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q57T30 3.57e-43 143 49 4 168 3 skp Chaperone protein Skp Salmonella choleraesuis (strain SC-B67)
Q493C3 3.34e-41 139 45 2 158 3 skp Chaperone protein Skp Blochmanniella pennsylvanica (strain BPEN)
Q3Z5I0 2.88e-39 134 51 3 149 3 skp Chaperone protein Skp Shigella sonnei (strain Ss046)
P0AEV0 2.88e-39 134 51 3 149 3 skp Chaperone protein Skp Shigella flexneri
Q32JT1 2.88e-39 134 51 3 149 3 skp Chaperone protein Skp Shigella dysenteriae serotype 1 (strain Sd197)
Q325W2 2.88e-39 134 51 3 149 3 skp Chaperone protein Skp Shigella boydii serotype 4 (strain Sb227)
P0AEU7 2.88e-39 134 51 3 149 1 skp Chaperone protein Skp Escherichia coli (strain K12)
P0AEU8 2.88e-39 134 51 3 149 3 skp Chaperone protein Skp Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEU9 2.88e-39 134 51 3 149 3 skp Chaperone protein Skp Escherichia coli O157:H7
Q7VRD7 2.65e-36 126 42 2 159 3 skp Chaperone protein Skp Blochmanniella floridana
Q9KPW1 3.12e-33 118 37 3 172 3 skp Chaperone protein Skp Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q57483 1.31e-23 94 33 4 195 1 omp26 Outer membrane protein 26 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q51922 1.68e-14 70 28 4 187 1 skp Outer membrane p25 Pasteurella multocida (strain Pm70)
Q9HXY5 7.72e-08 52 28 3 171 3 PA3647 Skp-like protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_09390
Feature type CDS
Gene -
Product Chaperone protein Skp
Location 18523 - 19023 (strand: -1)
Length 501 (nucleotides) / 166 (amino acids)
In genomic island -

Contig

Accession ZDB_524
Length 215957 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1120
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03938 Outer membrane protein (OmpH-like)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2825 Cell wall/membrane/envelope biogenesis (M)
Posttranslational modification, protein turnover, chaperones (O)		 MO Periplasmic chaperone for outer membrane proteins, Skp family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06142 outer membrane protein - -

Protein Sequence

MKKLLTAASVGMVLAMSAGAAQAADKIAVVNIGEVVQKMPGREAAAKQLESEFKSRGTELQSLEKDLQTRAQKLQKDGATMKDSERQKLAGEFDTKRADFAKKAQAFDQDFQKRQMEERNKVMKRVEDAVKSVASKGGYDVVIDANAVAYSVSGIDITADVLKQVK

Flanking regions ( +/- flanking 50bp)

ACCATTGGGTTTAATATCCAACCAGTAAATGGTGTTTAAGGGGTTTTATTGTGAAAAAGTTATTAACTGCTGCCAGCGTGGGTATGGTATTAGCGATGTCTGCCGGTGCTGCTCAGGCTGCTGACAAGATCGCGGTTGTCAATATCGGTGAAGTTGTCCAGAAAATGCCGGGCCGTGAAGCGGCAGCAAAACAACTGGAAAGCGAATTCAAAAGCCGTGGTACTGAACTGCAGAGTTTAGAAAAAGATCTGCAGACCCGTGCTCAGAAACTGCAGAAAGACGGCGCGACCATGAAAGACAGCGAGCGTCAGAAACTGGCAGGTGAATTCGACACCAAACGTGCTGACTTCGCGAAAAAAGCCCAGGCATTTGACCAGGATTTCCAGAAACGTCAGATGGAAGAGCGCAACAAAGTCATGAAACGTGTTGAAGATGCAGTGAAATCTGTTGCTTCAAAAGGCGGATATGACGTTGTGATCGATGCCAACGCAGTTGCTTACTCTGTTTCCGGCATTGATATCACTGCTGACGTTCTGAAACAGGTTAAATAATTAATGTCTTCCATTCGATTAGCTGATCTCGCTCAGCAGTTGAATGCAAC