COG2825


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2825, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Periplasmic chaperone for outer membrane proteins, Skp family
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)
Posttranslational modification, protein turnover, chaperones (O)

Occurence in the database

COG2825 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1053 FBDBKF_05965 17951 18451 -1 Chaperone protein Skp Morganella morganii S1
1 group_1053 EHELCC_09010 18523 19023 -1 Chaperone protein Skp Morganella morganii S2
2 group_1053 NLDBIP_09390 18523 19023 -1 Chaperone protein Skp Morganella morganii S4
3 group_1053 LHKJJB_08365 198215 198715 1 Chaperone protein Skp Morganella morganii S3
4 group_1053 HKOGLL_07915 198215 198715 1 Chaperone protein Skp Morganella morganii S5
5 group_1053 F4V73_RS15930 194880 195380 1 OmpH family outer membrane protein Morganella psychrotolerans
6 group_1053 PMI_RS11240 2473499 2473996 -1 OmpH family outer membrane protein Proteus mirabilis HI4320