Orthogroup:group_1006


Homologs in group_1006

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05620 FBDBKF_05620 Morganella morganii S1 sapA ABC transporter substrate-binding protein SapA
EHELCC_11970 EHELCC_11970 Morganella morganii S2 sapA ABC transporter substrate-binding protein SapA
NLDBIP_12310 NLDBIP_12310 Morganella morganii S4 sapA ABC transporter substrate-binding protein SapA
LHKJJB_12170 LHKJJB_12170 Morganella morganii S3 sapA ABC transporter substrate-binding protein SapA
HKOGLL_10785 HKOGLL_10785 Morganella morganii S5 sapA ABC transporter substrate-binding protein SapA
F4V73_RS03685 F4V73_RS03685 Morganella psychrotolerans sapA ABC transporter substrate-binding protein SapA
PMI_RS06655 PMI_RS06655 Proteus mirabilis HI4320 sapA ABC transporter substrate-binding protein SapA

Distribution of group_1006 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1006 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1006

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1006.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 sapA 7

Product

# Product Occurence
1 ABC transporter substrate-binding protein SapA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0747 7 E Amino acid transport and metabolism (E) ABC-type transport system, periplasmic component

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K19226 7 cationic peptide transport system substrate-binding protein Cationic antimicrobial peptide (CAMP) resistance
ABC transporters		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00496 7 Bacterial extracellular solute-binding proteins, family 5 Middle

Annotations of the 82 SwissProt hits

Annotation Number of occurrences
Di/tripeptide-binding protein 1 1
Di/tripeptide-binding protein 2 1
Di/tripeptide-binding protein 3 1
Di/tripeptide-binding protein 4 1
Dipeptide-binding protein 3
Dipeptide-binding protein DppE 1
Glutathione-binding protein GsiB 16
HTH-type transcriptional regulator SgrR 11
Heme-binding protein A 1
Metal-staphylopine-binding protein CntA 2
Nickel-binding periplasmic protein 1
Nickel-binding protein NikA 1
Oligopeptide-binding protein AliA 1
Oligopeptide-binding protein AliB 2
Oligopeptide-binding protein AmiA 1
Oligopeptide-binding protein AppA 1
Oligopeptide-binding protein OppA 3
Oligopeptide-binding protein SarA 1
Peptide transport periplasmic protein SapA 2
Periplasmic murein peptide-binding protein MppA 1
Periplasmic oligopeptide-binding protein OppA 3
Probable ABC transporter periplasmic-binding protein SapA 1
Probable ABC transporter-binding protein DR_1571 1
Probable D,D-dipeptide-binding periplasmic protein DdpA 1
Probable deoxycholate-binding periplasmic protein YgiS 1
Probable di/tripeptide-binding protein 5 1
Probable peptide ABC transporter periplasmic-binding protein y4tO 1
Protein XP55 1
Putative ABC transporter peptide-binding protein BAB2_0812 1
Putative ABC transporter peptide-binding protein BMEII0859 1
Putative ABC transporter peptide-binding protein BOV_A0352 1
Putative ABC transporter peptide-binding protein BRA0409/BS1330_II0406 1
Putative ABC transporter peptide-binding protein BruAb2_0792 1
Putative binding protein BAB2_0664 1
Putative binding protein BMEII0691 1
Putative binding protein BRA0576/BS1330_II0571 1
Putative binding protein BruAb2_0648 1
Putative peptide-binding periplasmic protein BAB2_1049 1
Putative peptide-binding periplasmic protein BMEII0210 1
Putative peptide-binding periplasmic protein BRA1090/BS1330_II1082 1
Putative peptide-binding periplasmic protein BruAb2_1030 1
Tripeptide-binding protein 1
Uncharacterized protein MT1317 1
Uncharacterized protein Mb1311c 1
Uncharacterized protein Rv1280c 1
Uncharacterized protein YejA 1
Uncharacterized protein YhjP 1
Uncharacterized protein y4wM 1

Protein length

Min length 562
Max length 569
Mean length (sd) 563.1 (2.6)
Median length 562.0

Protein length distribution