Orthogroup:group_1004


Homologs in group_1004

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05610 FBDBKF_05610 Morganella morganii S1 pspA phage shock protein PspA
EHELCC_11980 EHELCC_11980 Morganella morganii S2 pspA phage shock protein PspA
NLDBIP_12320 NLDBIP_12320 Morganella morganii S4 pspA phage shock protein PspA
LHKJJB_12180 LHKJJB_12180 Morganella morganii S3 pspA phage shock protein PspA
HKOGLL_10795 HKOGLL_10795 Morganella morganii S5 pspA phage shock protein PspA
F4V73_RS03695 F4V73_RS03695 Morganella psychrotolerans pspA phage shock protein PspA
PMI_RS06645 PMI_RS06645 Proteus mirabilis HI4320 pspA phage shock protein PspA

Distribution of group_1004 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1004 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1004

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1004.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 pspA 7

Product

# Product Occurence
1 phage shock protein PspA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1842 7 KT Transcription (K)
Signal transduction mechanisms (T)		 Phage shock protein A

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03969 7 phage shock protein A - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04012 7 PspA/IM30 family

Annotations of the 11 SwissProt hits

Annotation Number of occurrences
Membrane-associated protein VIPP1, chloroplastic 3
Membrane-associated protein Vipp1 2
Phage shock protein A 3
Phage shock protein A homolog 2
Protein LiaH 1

Protein length

Min length 222
Max length 224
Mean length (sd) 223.7 (0.8)
Median length 224.0

Protein length distribution