Homologs in group_377

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14290 FBDBKF_14290 23.5 Morganella morganii S1 - Colicin pore forming domain-containing protein
EHELCC_07990 EHELCC_07990 23.5 Morganella morganii S2 - Colicin pore forming domain-containing protein
NLDBIP_08315 NLDBIP_08315 23.5 Morganella morganii S4 - Colicin pore forming domain-containing protein
LHKJJB_05950 LHKJJB_05950 23.5 Morganella morganii S3 - Colicin pore forming domain-containing protein
HKOGLL_04965 HKOGLL_04965 23.5 Morganella morganii S5 - Colicin pore forming domain-containing protein
F4V73_RS02615 F4V73_RS02615 25.4 Morganella psychrotolerans - colicin-like pore-forming protein
PMI_RS18765 PMI_RS18765 25.3 Proteus mirabilis HI4320 - colicin-like pore-forming protein

Distribution of the homologs in the orthogroup group_377

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_377

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q47108 8.21e-50 172 43 1 200 1 caa Colicin-A (Fragment) Escherichia coli
P04480 2.52e-47 176 43 1 200 1 caa Colicin-A Citrobacter freundii
P08083 2.09e-42 158 40 1 192 1 cna Colicin-N Escherichia coli
P05819 8.16e-36 142 35 1 203 1 cba Colicin-B Escherichia coli
P04479 1.31e-13 77 27 4 177 3 cib Colicin-Ib Escherichia coli
P06716 6.57e-13 74 28 3 201 1 cia Colicin-Ia Escherichia coli
Q47502 4.12e-12 72 30 6 205 3 cka Colicin-K Escherichia coli
Q47500 4.87e-11 68 29 5 195 3 cfa Colicin-5 Escherichia coli
Q47125 3.42e-08 59 27 6 195 3 cta Colicin-10 Escherichia coli
P21178 5.75e-08 58 27 7 198 3 cea Colicin-E1* Shigella sonnei
P02978 2.21e-07 57 27 7 198 1 cea Colicin-E1 Escherichia coli

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18775
Feature type CDS
Gene -
Product colicin-like pore-forming protein
Location 23591 - 25057 (strand: 1)
Length 1467 (nucleotides) / 488 (amino acids)

Contig

Accession NC_010555
Length 36289 nucleotides
Topology circular
Plasmid True

Orthology

Orthogroup group_377
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF01024 Colicin pore forming domain

Protein Sequence

MSKNNHSAETDHLSVTADRPSKGDLGSGPVGKGDGGDRNIISLSDPNASFSYTTSTIEGLEGLNFTVTVHGARIINPQNGHTTNNIEVDGKGNSVDYKKNNVQNNQLELPIPYNNKLARDRDLGRLTSRIRKDYFDLKNNKARVSIYNGHYIHTVTFDDAGNVQNISEEYIEKTYNRYSKGIPNEKKDRLEEVKRFAILGYKTEPSNILDYNVKIKEYEFIFTLNKLGFIEKFSKKIIKASQYESRQLNAFYKDLNIEQDEKKENLAKLMVVNAYQSYPQNKKFIQDAEKEALMGAADIITNTGEKISKHLGEKYKTIANEIASDLRNFQGKKLRSLSDALKMMEKINRNPNIKIKQADRVVLANAVRHVDTKILSENFQRLGKSFGVLGKVLSVEKLREKAAIGFETGNWKPLMLEVEAMIISGYATGIAISIAISFISSIASFLAIGALPTTLAIIATIMLISYLASLIDDKVVDKINNLLIPEAH

Flanking regions ( +/- flanking 50bp)

ATGCATATACAGTATCATTGACTGATTTTTAATAAAAAAAGGAAATTTTTATGAGTAAAAATAATCATTCAGCAGAGACCGATCATCTTTCAGTGACTGCCGATAGACCTAGTAAAGGTGATTTAGGTAGTGGCCCAGTAGGAAAAGGCGATGGAGGAGATAGAAATATTATCAGTTTAAGTGATCCAAATGCTTCGTTTTCATATACTACGTCAACAATAGAAGGGCTTGAGGGATTAAACTTTACGGTGACTGTACACGGAGCAAGGATTATTAATCCTCAAAATGGTCATACGACTAATAATATTGAAGTTGATGGAAAAGGTAATAGTGTTGATTATAAAAAAAATAATGTTCAGAATAACCAACTTGAATTACCGATACCTTATAATAATAAGTTGGCTCGTGATCGAGATTTAGGGAGATTAACGTCGAGAATAAGAAAAGATTATTTTGATTTGAAAAATAATAAGGCTAGAGTATCTATTTATAATGGGCATTATATTCATACCGTCACATTTGATGACGCTGGAAACGTGCAAAATATTTCTGAGGAATATATAGAGAAAACCTATAATCGCTATTCTAAGGGGATACCAAATGAGAAAAAAGATAGATTAGAAGAGGTAAAGAGATTTGCAATATTAGGTTATAAAACTGAGCCTAGTAATATTCTTGATTATAATGTAAAAATAAAGGAATATGAATTTATTTTTACATTAAATAAATTAGGTTTTATAGAAAAATTCTCCAAGAAAATTATAAAAGCATCACAATATGAAAGCCGCCAGTTAAATGCATTCTATAAAGATTTAAATATTGAACAAGATGAAAAAAAAGAAAATTTAGCGAAATTAATGGTTGTTAATGCATATCAATCGTACCCACAAAATAAAAAATTTATCCAAGATGCAGAAAAAGAGGCATTGATGGGAGCGGCAGATATTATCACTAATACTGGCGAAAAAATTAGTAAACACTTGGGGGAAAAATACAAAACTATTGCTAATGAGATCGCTAGTGATTTACGTAACTTTCAGGGAAAGAAATTACGTAGCTTGTCTGATGCATTAAAAATGATGGAAAAAATCAACCGTAATCCTAATATTAAGATAAAACAAGCGGATAGAGTGGTACTGGCTAATGCAGTGCGCCATGTGGATACAAAAATCCTGTCTGAAAATTTTCAGCGTTTAGGTAAGTCATTCGGGGTATTGGGTAAAGTCTTGAGTGTTGAAAAGCTTCGCGAAAAAGCAGCTATTGGTTTTGAGACTGGTAACTGGAAACCATTGATGCTGGAAGTGGAAGCTATGATAATCAGTGGATATGCTACGGGGATAGCGATAAGTATAGCAATAAGTTTTATCTCATCAATTGCATCATTTTTAGCTATAGGAGCATTACCTACAACCTTAGCAATTATAGCAACTATAATGTTAATTAGTTATTTAGCATCCTTAATTGATGATAAAGTTGTTGATAAAATTAACAACTTACTTATTCCAGAAGCTCATTAATTACTTTTGGTTATCTTATTTAGTTAAAACTATCTAAGATAACCATTTAT