Homologs in group_3914

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS12005 PMI_RS12005 33.3 Proteus mirabilis HI4320 - lytic transglycosylase domain-containing protein

Distribution of the homologs in the orthogroup group_3914

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3914

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8YDZ5 6.37e-31 116 38 4 167 3 virB1 Type IV secretion system protein virB1 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P0C398 7.4e-31 116 38 4 167 3 virB1 Type IV secretion system protein virB1 Brucella abortus biovar 1 (strain 9-941)
Q2YIT5 7.4e-31 116 38 4 167 3 virB1 Type IV secretion system protein virB1 Brucella abortus (strain 2308)
Q9RPY4 2.99e-30 114 38 4 167 2 virB1 Type IV secretion system protein virB1 Brucella suis biovar 1 (strain 1330)
P17791 9.18e-15 73 34 4 132 3 virB1 Protein virB1 Agrobacterium fabrum (strain C58 / ATCC 33970)
P0A3V6 1.62e-12 67 34 5 132 3 virB1 Protein virB1 Rhizobium radiobacter
P0A3V7 1.62e-12 67 34 5 132 3 virB1 Protein virB1 Agrobacterium tumefaciens (strain 15955)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18545
Feature type CDS
Gene -
Product lytic transglycosylase domain-containing protein
Location 2685 - 3320 (strand: 1)
Length 636 (nucleotides) / 211 (amino acids)
In genomic island -

Contig

Accession NC_010555
Length 36289 nucleotides
Topology circular
Plasmid True

Orthology

Orthogroup group_3914
Orthogroup size 2
N. genomes 1

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Genomic region

Domains

PF01464 Transglycosylase SLT domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03194 type IV secretion system protein VirB1 Bacterial secretion system -

Protein Sequence

MIKETLLSLALQCAPSVHTDTVIDIAKTESGFNPFAIAEIVTKDKIISHLPKSKNEALEIIERLETKNGRFSVGLMQIYSGNFKGYNVTAEEMLNPCSNLKIAEKILVDCFQRGGNLKNALSCYYSGNFETGHKKETAFNNTSYIERIGGQPIERTKTTVVVPSTKTIKQANTTQGNGNKTSLRHTSSIIYPEYIIRGQVTMHLQKVNDEQ

Flanking regions ( +/- flanking 50bp)

GAGTATAAGAAATCTCTGTCTGGAAATACGCATAAAGGTGAAGAACAGAAATGATTAAAGAAACGTTACTCTCATTAGCTTTGCAATGTGCCCCGTCAGTGCATACTGATACGGTGATAGATATTGCAAAAACGGAAAGCGGATTCAATCCGTTTGCCATTGCGGAGATCGTAACGAAAGATAAAATCATTAGTCATTTGCCGAAATCAAAAAATGAAGCTCTGGAAATTATCGAAAGGCTGGAAACAAAAAACGGACGATTTTCAGTTGGTCTGATGCAAATCTACTCCGGAAATTTTAAAGGGTATAACGTTACCGCAGAGGAAATGTTGAACCCGTGCAGTAATCTTAAAATAGCAGAAAAAATACTGGTAGATTGCTTTCAACGTGGAGGAAATTTAAAGAACGCATTAAGTTGTTATTACTCCGGTAATTTTGAAACAGGACACAAAAAAGAAACAGCATTTAATAATACCAGTTATATAGAGAGGATAGGAGGGCAGCCTATTGAAAGAACAAAAACAACGGTAGTTGTTCCAAGCACAAAAACAATTAAACAAGCGAATACAACACAGGGAAATGGAAATAAAACAAGTTTAAGGCACACCTCATCAATAATATATCCTGAATATATTATTCGAGGTCAGGTAACAATGCATTTGCAAAAGGTGAATGATGAACAGTAAAAAAATATTTGCACTTTTCATGATGGTTTTTATGGGGCTGTTTATGGTTG