Homologs in group_3914

Help

1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS18545 PMI_RS18545 33.3 Proteus mirabilis HI4320 - lytic transglycosylase domain-containing protein

Distribution of the homologs in the orthogroup group_3914

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_3914

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12005
Feature type CDS
Gene -
Product lytic transglycosylase domain-containing protein
Location 2653922 - 2654470 (strand: 1)
Length 549 (nucleotides) / 182 (amino acids)
In genomic island GI59

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3914
Orthogroup size 2
N. genomes 1

Actions

Genomic region

Domains

PF01464 Transglycosylase SLT domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0741 Cell wall/membrane/envelope biogenesis (M) M Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)

Protein Sequence

MKTIKAKTIALAIAMSASTSVYAFPGYQWEKAAQSVGIDPVMLYAVALAESASHRGLNMTSPWPYAIRNGSNATYAKSQTEAEQLLNQALQESEKYQLDIGLMQINLHWHGHRVSSAAELLDPITNLTVGSSILAEAIKSSPNDLELGIGRYHSWNEERARWYGQRVLSIYRNILHELEVRQ

Flanking regions ( +/- flanking 50bp)

AAGCCCGAAAGCCATTCAGGCGCTTCTCGGAAATCAATTAGAGGACAAAAATGAAAACGATTAAAGCAAAAACCATTGCACTAGCGATAGCCATGTCCGCAAGCACTTCAGTCTATGCTTTTCCGGGCTATCAGTGGGAAAAAGCAGCACAAAGCGTTGGTATTGATCCAGTCATGCTCTACGCCGTTGCCTTGGCTGAGTCCGCCTCACATCGCGGTCTCAACATGACCAGTCCATGGCCATACGCAATTCGCAATGGTTCAAATGCAACCTACGCCAAATCTCAGACAGAAGCGGAGCAACTGTTAAACCAAGCACTGCAAGAGAGTGAAAAATACCAGCTCGATATTGGCCTAATGCAAATCAATTTGCATTGGCACGGACATCGGGTGAGCTCAGCGGCGGAACTGCTAGACCCCATCACCAACCTTACCGTCGGCTCCAGTATTTTGGCCGAAGCAATCAAGTCTTCACCTAACGATTTAGAGCTTGGCATAGGCCGCTATCACAGTTGGAACGAAGAGCGTGCACGCTGGTATGGGCAAAGAGTGCTTTCTATTTATCGCAATATTTTACATGAACTGGAGGTCCGTCAATGACAACCAATCAACAAGACTTCTATCAATTAAACTTGGCGTACCTGCACGCA