Homologs in group_255

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04040 FBDBKF_04040 29.9 Morganella morganii S1 - Lytic transglycosylase
EHELCC_06495 EHELCC_06495 29.9 Morganella morganii S2 - Lytic transglycosylase
NLDBIP_06820 NLDBIP_06820 29.9 Morganella morganii S4 - Lytic transglycosylase
LHKJJB_06355 LHKJJB_06355 29.9 Morganella morganii S3 - Lytic transglycosylase
HKOGLL_04575 HKOGLL_04575 29.9 Morganella morganii S5 - Lytic transglycosylase
PMI_RS12795 PMI_RS12795 29.9 Proteus mirabilis HI4320 - transglycosylase SLT domain-containing protein
PMI_RS18545 PMI_RS18545 28.9 Proteus mirabilis HI4320 - lytic transglycosylase domain-containing protein

Distribution of the homologs in the orthogroup group_255

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_255

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12005
Feature type CDS
Gene -
Product lytic transglycosylase domain-containing protein
Location 2653922 - 2654470 (strand: 1)
Length 549 (nucleotides) / 182 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_255
Orthogroup size 8
N. genomes 6

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Genomic region

Domains

PF01464 Transglycosylase SLT domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0741 Cell wall/membrane/envelope biogenesis (M) M Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)

Protein Sequence

MKTIKAKTIALAIAMSASTSVYAFPGYQWEKAAQSVGIDPVMLYAVALAESASHRGLNMTSPWPYAIRNGSNATYAKSQTEAEQLLNQALQESEKYQLDIGLMQINLHWHGHRVSSAAELLDPITNLTVGSSILAEAIKSSPNDLELGIGRYHSWNEERARWYGQRVLSIYRNILHELEVRQ

Flanking regions ( +/- flanking 50bp)

AAGCCCGAAAGCCATTCAGGCGCTTCTCGGAAATCAATTAGAGGACAAAAATGAAAACGATTAAAGCAAAAACCATTGCACTAGCGATAGCCATGTCCGCAAGCACTTCAGTCTATGCTTTTCCGGGCTATCAGTGGGAAAAAGCAGCACAAAGCGTTGGTATTGATCCAGTCATGCTCTACGCCGTTGCCTTGGCTGAGTCCGCCTCACATCGCGGTCTCAACATGACCAGTCCATGGCCATACGCAATTCGCAATGGTTCAAATGCAACCTACGCCAAATCTCAGACAGAAGCGGAGCAACTGTTAAACCAAGCACTGCAAGAGAGTGAAAAATACCAGCTCGATATTGGCCTAATGCAAATCAATTTGCATTGGCACGGACATCGGGTGAGCTCAGCGGCGGAACTGCTAGACCCCATCACCAACCTTACCGTCGGCTCCAGTATTTTGGCCGAAGCAATCAAGTCTTCACCTAACGATTTAGAGCTTGGCATAGGCCGCTATCACAGTTGGAACGAAGAGCGTGCACGCTGGTATGGGCAAAGAGTGCTTTCTATTTATCGCAATATTTTACATGAACTGGAGGTCCGTCAATGACAACCAATCAACAAGACTTCTATCAATTAAACTTGGCGTACCTGCACGCA