Homologs in group_34

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14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13325 FBDBKF_13325 27.5 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_08770 EHELCC_08770 27.5 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_09095 NLDBIP_09095 27.5 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_05170 LHKJJB_05170 27.5 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_05745 HKOGLL_05745 27.5 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS01705 F4V73_RS01705 23.1 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS03430 F4V73_RS03430 28.4 Morganella psychrotolerans - helix-turn-helix domain-containing protein
F4V73_RS04165 F4V73_RS04165 19.7 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS04870 F4V73_RS04870 26.7 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS12525 F4V73_RS12525 18.6 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS17025 F4V73_RS17025 21.7 Morganella psychrotolerans - helix-turn-helix domain-containing protein
PMI_RS04495 PMI_RS04495 24.7 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein
PMI_RS05115 PMI_RS05115 27.5 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein
PMI_RS14600 PMI_RS14600 19.9 Proteus mirabilis HI4320 chbR transcriptional regulator ChbR

Distribution of the homologs in the orthogroup group_34

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_34

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q02458 0.0 561 99 0 271 1 ureR Urease operon transcriptional activator Proteus mirabilis (strain HI4320)
P32326 3.64e-144 409 71 0 260 4 ureR Urease operon transcriptional activator Escherichia coli
P05052 1.48e-20 90 34 1 130 1 appY HTH-type transcriptional regulator AppY Escherichia coli (strain K12)
P33234 5.55e-17 81 27 1 147 2 adiY HTH-type transcriptional regulator AdiY Escherichia coli (strain K12)
P0CL08 1.26e-16 81 36 0 95 4 hilD Transcriptional regulator HilD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
E1WAC0 1.26e-16 81 36 0 95 4 hilD Transcriptional regulator HilD Salmonella typhimurium (strain SL1344)
Q9EYV5 1.37e-16 80 30 4 153 3 gadX HTH-type transcriptional regulator GadX Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q8FCI6 1.56e-16 80 30 4 152 3 gadX HTH-type transcriptional regulator GadX Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8FCI7 3.08e-16 79 27 1 138 3 gadW HTH-type transcriptional regulator GadW Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P63203 7.32e-16 78 32 0 107 3 gadW HTH-type transcriptional regulator GadW Shigella flexneri
P63201 7.32e-16 78 32 0 107 1 gadW HTH-type transcriptional regulator GadW Escherichia coli (strain K12)
P63202 7.32e-16 78 32 0 107 3 gadW HTH-type transcriptional regulator GadW Escherichia coli O157:H7
P37639 5.91e-15 76 28 3 152 1 gadX HTH-type transcriptional regulator GadX Escherichia coli (strain K12)
Q83PR0 6.27e-15 76 28 3 152 3 gadX HTH-type transcriptional regulator GadX Shigella flexneri
P23774 6.44e-15 75 35 0 96 4 fapR 987P fimbrial operon positive regulatory protein FapR Escherichia coli
P58230 7.64e-15 75 28 3 152 3 gadX HTH-type transcriptional regulator GadX Escherichia coli O157:H7
P43459 1.07e-13 72 29 0 119 4 perA Transcriptional activator PerA Escherichia coli O127:H6 (strain E2348/69 / EPEC)
P10805 1.12e-13 72 26 3 192 4 envY Porin thermoregulatory protein EnvY Escherichia coli (strain K12)
P76135 1.15e-13 72 33 3 115 2 ydeO HTH-type transcriptional regulator YdeO Escherichia coli (strain K12)
P16114 3.03e-13 71 36 0 95 1 rns Regulatory protein Rns Escherichia coli
Q8Z4A6 4.42e-13 71 34 0 95 3 sirC Transcriptional regulator SirC Salmonella typhi
P0CL09 4.55e-13 71 34 0 95 4 sirC Transcriptional regulator sirC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
E1WAB2 4.55e-13 71 34 0 95 3 sirC Transcriptional regulator SirC Salmonella typhimurium (strain SL1344)
P25393 6.08e-13 70 35 0 95 1 cfaD CFA/I fimbrial subunit D Escherichia coli
Q8FHG0 1.87e-12 68 32 3 115 3 ydeO HTH-type transcriptional regulator YdeO Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q83RF4 7.51e-12 67 30 3 115 3 ydeO HTH-type transcriptional regulator YdeO Shigella flexneri
Q8X4Z9 8.96e-12 67 31 1 98 3 Z2209 HTH-type transcriptional regulator YdeO Escherichia coli O157:H7
P43464 1.99e-11 66 33 0 95 4 aggR Transcriptional activator AggR Escherichia coli
P77634 2.24e-11 65 34 0 97 4 ybcM Uncharacterized HTH-type transcriptional regulator YbcM Escherichia coli (strain K12)
P0A2T3 1.07e-10 63 31 0 93 3 virF Virulence regulon transcriptional activator VirF Shigella sonnei
P0A2T1 1.07e-10 63 31 0 93 2 virF Virulence regulon transcriptional activator VirF Shigella flexneri
P0A2T2 1.07e-10 63 31 0 93 3 virF Virulence regulon transcriptional activator VirF Shigella dysenteriae
P72171 1.55e-10 63 40 0 80 4 oruR Ornithine utilization regulator Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P68912 2.08e-10 63 37 1 101 4 BQ2027_MB1430 Uncharacterized HTH-type transcriptional regulator Mb1430 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WMJ1 2.08e-10 63 37 1 101 1 Rv1395 Uncharacterized HTH-type transcriptional regulator Rv1395 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMJ0 2.08e-10 63 37 1 101 4 MT1440 Uncharacterized HTH-type transcriptional regulator MT1440 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P43460 3.95e-10 62 33 1 105 4 csvR HTH-type transcriptional activator CsvR Escherichia coli
P0C6D6 3.13e-09 59 27 0 95 1 tcpN TCP pilus virulence regulatory protein Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F384 3.13e-09 59 27 0 95 1 tcpN TCP pilus virulence regulatory protein Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q9Z3Q6 1.11e-08 58 26 6 182 4 rhrA Transcriptional activator RhrA Rhizobium meliloti (strain 1021)
P77396 2.35e-08 57 26 7 213 4 ypdC Uncharacterized HTH-type transcriptional regulator YpdC Escherichia coli (strain K12)
P45008 2.5e-08 57 35 1 91 4 HI_1052 Uncharacterized HTH-type transcriptional regulator HI_1052 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q05587 1.14e-07 55 32 1 90 1 pocR Regulatory protein PocR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P35319 3.22e-07 53 33 1 89 4 None Putative AraC-like transcription regulator Streptomyces lividans
A6TGA9 3.63e-07 53 28 6 176 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
P19219 5.09e-07 52 23 4 190 1 adaA Bifunctional transcriptional activator/DNA repair enzyme AdaA Bacillus subtilis (strain 168)
B5XZ49 1.06e-06 52 28 6 176 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae (strain 342)
O32071 2.06e-06 52 27 1 99 4 ytdP Uncharacterized HTH-type transcriptional regulator YtdP Bacillus subtilis (strain 168)
A4WG90 3.37e-06 50 28 3 148 3 rhaR HTH-type transcriptional activator RhaR Enterobacter sp. (strain 638)
B4TBY3 1.24e-05 49 33 2 86 3 rhaS HTH-type transcriptional activator RhaS Salmonella heidelberg (strain SL476)
B4TPQ9 1.27e-05 49 33 2 86 3 rhaS HTH-type transcriptional activator RhaS Salmonella schwarzengrund (strain CVM19633)
P32677 1.3e-05 49 31 1 82 4 yijO Uncharacterized HTH-type transcriptional regulator YijO Escherichia coli (strain K12)
B5BJG8 1.31e-05 48 33 2 86 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain AKU_12601)
Q5PKG2 1.31e-05 48 33 2 86 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q57HG8 1.31e-05 48 33 2 86 3 rhaS HTH-type transcriptional activator RhaS Salmonella choleraesuis (strain SC-B67)
P0A2S9 1.35e-05 48 33 2 86 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2T0 1.35e-05 48 33 2 86 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhi
C0Q3L4 1.35e-05 48 33 2 86 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi C (strain RKS4594)
A9MZC8 1.35e-05 48 33 2 86 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4SZZ3 1.35e-05 48 33 2 86 3 rhaS HTH-type transcriptional activator RhaS Salmonella newport (strain SL254)
B5RFC3 1.35e-05 48 33 2 86 3 rhaS HTH-type transcriptional activator RhaS Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QWY4 1.35e-05 48 33 2 86 3 rhaS HTH-type transcriptional activator RhaS Salmonella enteritidis PT4 (strain P125109)
B5F0M9 1.35e-05 48 33 2 86 3 rhaS HTH-type transcriptional activator RhaS Salmonella agona (strain SL483)
A9MI64 1.4e-05 48 33 2 86 3 rhaS HTH-type transcriptional activator RhaS Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
Q9WW32 1.46e-05 48 25 3 133 1 mtrA HTH-type transcriptional regulator MtrA Neisseria gonorrhoeae
B5FPP5 1.46e-05 48 33 2 86 3 rhaS HTH-type transcriptional activator RhaS Salmonella dublin (strain CT_02021853)
O31517 1.92e-05 48 33 4 93 3 yesN Uncharacterized transcriptional regulatory protein YesN Bacillus subtilis (strain 168)
P31449 2.02e-05 48 29 2 109 4 yidL Uncharacterized HTH-type transcriptional regulator YidL Escherichia coli (strain K12)
Q8Z2V5 3.34e-05 47 39 0 68 3 rhaR HTH-type transcriptional activator RhaR Salmonella typhi
B4TBY4 3.34e-05 47 39 0 68 3 rhaR HTH-type transcriptional activator RhaR Salmonella heidelberg (strain SL476)
Q57HG7 3.34e-05 47 39 0 68 3 rhaR HTH-type transcriptional activator RhaR Salmonella choleraesuis (strain SC-B67)
B4TPR0 4.6e-05 47 38 0 68 3 rhaR HTH-type transcriptional activator RhaR Salmonella schwarzengrund (strain CVM19633)
B5FPP6 4.86e-05 47 38 0 68 3 rhaR HTH-type transcriptional activator RhaR Salmonella dublin (strain CT_02021853)
B5F0N0 4.91e-05 47 38 0 68 3 rhaR HTH-type transcriptional activator RhaR Salmonella agona (strain SL483)
P40865 4.95e-05 47 38 0 68 3 rhaR HTH-type transcriptional activator RhaR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B5BJG9 4.95e-05 47 38 0 68 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi A (strain AKU_12601)
A9MZC9 4.95e-05 47 38 0 68 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PKG1 4.95e-05 47 38 0 68 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4SZZ4 4.95e-05 47 38 0 68 3 rhaR HTH-type transcriptional activator RhaR Salmonella newport (strain SL254)
B5QWY5 4.95e-05 47 38 0 68 3 rhaR HTH-type transcriptional activator RhaR Salmonella enteritidis PT4 (strain P125109)
A9MI63 5.33e-05 47 38 0 68 3 rhaR HTH-type transcriptional activator RhaR Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
A8AL27 6.91e-05 47 32 2 86 3 rhaS HTH-type transcriptional activator RhaS Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
A9QYR8 8.14e-05 46 26 7 178 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis bv. Antiqua (strain Angola)
B1JNC5 8.29e-05 46 26 7 178 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
A4TRS8 8.29e-05 46 26 7 178 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis (strain Pestoides F)
B2K1W5 8.29e-05 46 26 7 178 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A7FN80 8.29e-05 46 26 7 178 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q66FF2 8.68e-05 46 26 7 178 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype I (strain IP32953)
A4WG91 8.77e-05 46 25 11 263 3 rhaS HTH-type transcriptional activator RhaS Enterobacter sp. (strain 638)
Q8NRR3 9.74e-05 46 26 3 119 2 ripA HTH-type transcriptional regulator RipA Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
P07642 0.00012 46 27 2 113 3 araC Arabinose operon regulatory protein Dickeya chrysanthemi
Q65Q31 0.000342 44 22 1 101 3 rhaS HTH-type transcriptional activator RhaS Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
Q9I1P2 0.000382 44 30 0 97 4 vqsM HTH-type transcriptional regulator VqsM Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q65Q30 0.00042 44 24 1 104 3 rhaR HTH-type transcriptional activator RhaR Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
Q1CEB5 0.000503 44 26 7 178 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis bv. Antiqua (strain Nepal516)
Q8ZJ00 0.000503 44 26 7 178 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis
Q1C0W1 0.000503 44 26 7 178 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis bv. Antiqua (strain Antiqua)
Q8FQS2 0.000513 44 28 3 112 3 ripA HTH-type transcriptional regulator RipA Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
Q32A71 0.000659 43 34 1 78 3 rhaR HTH-type transcriptional activator RhaR Shigella dysenteriae serotype 1 (strain Sd197)
Q1R413 0.000671 43 34 1 78 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain UTI89 / UPEC)
A1AI83 0.000671 43 34 1 78 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O1:K1 / APEC
P09378 0.000689 43 34 1 78 1 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12)
A8A710 0.000689 43 34 1 78 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O9:H4 (strain HS)
C5A074 0.000689 43 34 1 78 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12 / MC4100 / BW2952)
Q83PD9 0.000702 43 34 1 78 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri
Q0SZ96 0.000702 43 34 1 78 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri serotype 5b (strain 8401)
Q8X7B3 0.000715 43 34 1 78 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O157:H7
O87389 0.000752 43 27 2 113 4 glxA HTH-type transcriptional regulator GlxA Rhizobium meliloti (strain 1021)
Q00753 0.000759 43 32 1 83 4 msmR Msm operon regulatory protein Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
Q31U83 0.000769 43 34 1 78 3 rhaR HTH-type transcriptional activator RhaR Shigella boydii serotype 4 (strain Sb227)
Q8FBD7 0.000769 43 34 1 78 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TAF7 0.000769 43 34 1 78 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A7ZUB8 0.000769 43 34 1 78 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O139:H28 (strain E24377A / ETEC)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18315
Feature type CDS
Gene -
Product AraC family transcriptional regulator
Location 4022520 - 4023335 (strand: -1)
Length 816 (nucleotides) / 271 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_34
Orthogroup size 15
N. genomes 7

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Genomic region

Domains

PF12833 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Protein Sequence

MIAIVYGAKGEICINGQTITVTTNLTLIIPKYSQVSCDVTNFFPTKPIELHTLVLSETELQSVFSLLKPLIKSGAPITRHLPDYHLSTPEVVKTNFTLLQQCLPLEHGTPSQETLFMQQSLFFILLAVYHEGVDILNIFRFNYDEPKNQAITHLITQDPQRKWHLEDVAKTLYTTPSTLRRHLSKEGVSFCQLLLDVRMGIALNYLTFSNYSVFQISHRCGFGSNAYFCDAFKRKYGMTPSQFRTQSRQANDPNAIATMASQNDESIKKVF

Flanking regions ( +/- flanking 50bp)

TACTTTCTTCTAACCAAATATCCTTAAAAACGTTTTACATCGAAAACCCGATGATCGCGATAGTATATGGTGCAAAAGGTGAGATTTGTATTAATGGGCAAACTATCACAGTCACCACTAATCTCACGTTGATTATTCCTAAATATAGTCAAGTTTCTTGTGATGTGACAAATTTTTTCCCGACCAAACCGATTGAATTACATACCTTAGTACTGTCTGAAACTGAATTACAATCTGTGTTCTCTTTACTCAAACCATTAATAAAATCAGGGGCGCCGATTACTCGTCATCTTCCAGATTATCATCTATCAACACCTGAGGTGGTTAAAACTAATTTTACGTTACTTCAGCAATGTCTACCGCTTGAACATGGCACCCCCTCTCAAGAGACCCTGTTTATGCAACAGAGCCTCTTTTTTATTTTGCTGGCGGTTTATCACGAAGGGGTCGATATTCTTAATATTTTTCGTTTTAATTATGATGAGCCAAAAAATCAGGCGATCACTCATCTAATAACACAAGATCCGCAACGTAAATGGCATTTAGAGGATGTAGCAAAAACGCTCTATACTACACCATCAACATTACGTCGCCATTTAAGTAAAGAGGGCGTTTCGTTTTGCCAATTACTGTTGGATGTCAGAATGGGGATCGCATTAAATTACCTCACCTTTTCTAACTATTCTGTGTTTCAAATAAGTCATCGCTGTGGTTTTGGTAGTAATGCTTATTTTTGTGACGCATTTAAACGTAAATATGGTATGACACCATCGCAATTTCGCACTCAATCTCGCCAAGCAAACGATCCGAATGCAATAGCAACAATGGCGTCACAAAATGACGAATCAATAAAAAAAGTATTTTAACGGTTATAACAACGCATTTTTGCTTAAAAACGAAGTTCCTCCCATTAACC