Homologs in group_1765

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12285 FBDBKF_12285 71.9 Morganella morganii S1 glpQ glycerophosphodiester phosphodiesterase
EHELCC_14020 EHELCC_14020 71.9 Morganella morganii S2 glpQ glycerophosphodiester phosphodiesterase
NLDBIP_15115 NLDBIP_15115 71.9 Morganella morganii S4 glpQ glycerophosphodiester phosphodiesterase
LHKJJB_15495 LHKJJB_15495 71.9 Morganella morganii S3 glpQ glycerophosphodiester phosphodiesterase
HKOGLL_14615 HKOGLL_14615 71.9 Morganella morganii S5 glpQ glycerophosphodiester phosphodiesterase
F4V73_RS17115 F4V73_RS17115 75.8 Morganella psychrotolerans glpQ glycerophosphodiester phosphodiesterase

Distribution of the homologs in the orthogroup group_1765

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1765

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P09394 0.0 563 74 1 354 1 glpQ Glycerophosphodiester phosphodiesterase, periplasmic Escherichia coli (strain K12)
Q06282 1.36e-167 474 64 3 354 1 glpQ Glycerophosphodiester phosphodiesterase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O30405 3.9e-133 387 51 2 351 1 glpQ Glycerophosphodiester phosphodiesterase Treponema pallidum (strain Nichols)
Q9SD81 9.46e-31 123 32 12 342 2 GDPD6 Glycerophosphodiester phosphodiesterase GDPD6 Arabidopsis thaliana
Q9C907 1.83e-28 117 29 12 345 2 GDPD5 Glycerophosphodiester phosphodiesterase GDPD5 Arabidopsis thaliana
P37965 4.47e-23 100 28 13 343 1 glpQ Glycerophosphodiester phosphodiesterase Bacillus subtilis (strain 168)
Q8RB32 6.32e-14 73 30 11 228 1 UgpQ Glycerophosphodiester phosphodiesterase Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
O07592 2.82e-13 72 24 11 321 3 yhdW Putative glycerophosphodiester phosphodiesterase YhdW Bacillus subtilis (strain 168)
P9WMU3 1.65e-09 61 50 0 59 1 glpQ1 Probable glycerophosphodiester phosphodiesterase 1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMU2 1.65e-09 61 50 0 59 3 glpQ1 Probable glycerophosphodiester phosphodiesterase 1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P54527 4.37e-09 60 27 8 194 4 yqiK Uncharacterized protein YqiK Bacillus subtilis (strain 168)
O14169 1.03e-06 53 38 1 86 3 SPAC4D7.02c Phosphatidylglycerol phospholipase C Schizosaccharomyces pombe (strain 972 / ATCC 24843)
A0A8F4N283 2.82e-06 51 44 0 56 1 bagdpd Glycerophosphodiester phosphodiesterase Bacillus altitudinis
Q9HCC8 8.77e-06 51 31 1 89 1 GDPD2 Glycerophosphoinositol inositolphosphodiesterase GDPD2 Homo sapiens
Q3T0T0 2.27e-05 49 28 9 192 2 GDE1 Glycerophosphodiester phosphodiesterase 1 Bos taurus
Q9JL55 4.24e-05 48 32 1 102 1 Gde1 Glycerophosphodiester phosphodiesterase 1 Rattus norvegicus
Q9ESM6 4.49e-05 48 30 1 89 1 Gdpd2 Glycerophosphoinositol inositolphosphodiesterase GDPD2 Mus musculus
Q9JL56 4.52e-05 48 43 1 66 1 Gde1 Glycerophosphodiester phosphodiesterase 1 Mus musculus
Q08959 8.73e-05 47 45 0 55 1 PGC1 Phosphatidylglycerol phospholipase C Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q9NZC3 8.76e-05 47 44 0 61 1 GDE1 Glycerophosphodiester phosphodiesterase 1 Homo sapiens
Q8WTR4 8.79e-05 48 37 0 66 1 GDPD5 Glycerophosphodiester phosphodiesterase domain-containing protein 5 Homo sapiens
Q8N9F7 0.00015 46 44 0 61 1 GDPD1 Lysophospholipase D GDPD1 Homo sapiens
Q6W3E5 0.000214 47 32 0 75 2 GDPD4 Glycerophosphodiester phosphodiesterase domain-containing protein 4 Homo sapiens
Q9CRY7 0.000235 46 44 0 61 1 Gdpd1 Lysophospholipase D GDPD1 Mus musculus
Q7L5L3 0.000247 46 48 0 50 1 GDPD3 Lysophospholipase D GDPD3 Homo sapiens
Q0VGK4 0.000257 46 44 0 61 2 Gdpd1 Lysophospholipase D GDPD1 Rattus norvegicus
P47535 0.000347 45 43 0 51 4 MG293 Uncharacterized protein MG293 Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q95JR7 0.001 44 28 1 110 2 GDPD4 Glycerophosphodiester phosphodiesterase domain-containing protein 4 Macaca fascicularis

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS17860
Feature type CDS
Gene glpQ
Product glycerophosphodiester phosphodiesterase
Location 3922509 - 3923588 (strand: -1)
Length 1080 (nucleotides) / 359 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1765
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03009 Glycerophosphoryl diester phosphodiesterase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0584 Lipid transport and metabolism (I) I Glycerophosphoryl diester phosphodiesterase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01126 glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] Glycerophospholipid metabolism -

Protein Sequence

MSTPFKLKPLVAGVLLTLSLSTIAQAASDKVVIAHRGASGYLPEHTLPAKALAYAQGADYLEQDLVMTKDNQLVVLHDHYLDRVTDVAERYPDRARKDGRYYAIDFTLDEIKGLKFTEGFDIVDGKKVQSYPNRFPMGKSDFRIHTFQEEIEFIQGLNKSTGQDIGIYPEIKAPWFHEQEGKDITKKVLEVLKQYGYTQKSDNVYLQSFDPNDLKRIKTELMPQMGMDLKLVQLIAYTDWNETYEKQPDGTWTNYSYDWMFKPGAMKEIATYADGIGPDYHMLVEEDSTPDKITLTGMAADAHANKLTIHPFTVRVDKLPKYAKDGDQLYDIIYNQAGAEGVFTDFPDLGVKFLQKQAK

Flanking regions ( +/- flanking 50bp)

TGCCAACTGTACATAGCTTTATTGTACGAAAATGAAAATGGAGCAACTTTATGAGTACACCTTTCAAACTGAAACCGTTAGTGGCGGGCGTTCTTTTAACTCTATCTTTAAGTACAATCGCACAAGCAGCAAGCGATAAAGTAGTGATTGCCCATCGTGGTGCCAGCGGTTATTTACCTGAACACACCTTACCTGCCAAAGCACTCGCCTATGCACAAGGTGCCGATTATCTAGAACAAGATCTGGTGATGACAAAAGATAACCAACTGGTTGTCTTGCATGATCACTATCTCGATCGTGTCACCGATGTTGCTGAACGCTATCCAGACAGAGCAAGAAAAGATGGCCGTTACTATGCTATCGATTTTACTCTTGATGAGATCAAAGGACTGAAATTTACCGAAGGTTTCGATATTGTTGACGGTAAAAAAGTCCAAAGTTATCCAAATCGTTTCCCAATGGGAAAATCCGATTTTCGCATCCACACTTTCCAAGAAGAAATTGAGTTTATCCAAGGCTTAAACAAATCAACAGGACAAGATATTGGTATTTATCCTGAGATCAAAGCACCTTGGTTTCATGAACAAGAAGGGAAAGACATTACTAAAAAAGTTCTCGAAGTCTTAAAACAGTATGGCTATACCCAAAAGAGCGATAATGTTTATCTACAATCCTTTGATCCTAACGATCTAAAACGCATTAAAACAGAATTGATGCCACAAATGGGGATGGATTTAAAACTGGTTCAGTTAATCGCTTATACCGATTGGAATGAGACATATGAAAAACAACCAGATGGCACATGGACAAACTACAGTTATGACTGGATGTTTAAACCTGGCGCCATGAAAGAAATTGCGACTTATGCTGATGGCATTGGCCCTGATTATCATATGTTAGTAGAAGAAGACTCAACACCAGATAAAATCACCTTAACCGGTATGGCTGCCGATGCTCATGCCAACAAGTTAACCATTCATCCATTTACGGTACGAGTGGATAAACTACCTAAATATGCCAAAGATGGCGATCAGCTTTATGACATTATTTATAACCAAGCGGGTGCCGAAGGGGTATTTACTGATTTCCCTGATTTAGGGGTTAAGTTCTTACAAAAACAAGCTAAATAACCTTTATTTCTGTTATCCTGCTCTTATCAATAAAGGGCAGGATAATTTCC