Homologs in group_1434

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08870 FBDBKF_08870 58.4 Morganella morganii S1 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH
EHELCC_12655 EHELCC_12655 58.4 Morganella morganii S2 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH
NLDBIP_12995 NLDBIP_12995 58.4 Morganella morganii S4 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH
LHKJJB_13560 LHKJJB_13560 58.4 Morganella morganii S3 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH
HKOGLL_11470 HKOGLL_11470 58.4 Morganella morganii S5 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH
F4V73_RS10075 F4V73_RS10075 58.1 Morganella psychrotolerans ampH D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH

Distribution of the homologs in the orthogroup group_1434

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1434

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AD70 2.59e-123 365 51 3 345 1 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH Escherichia coli (strain K12)
P0AD71 2.59e-123 365 51 3 345 3 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH Escherichia coli O157:H7
Q54VJ1 2.34e-17 87 27 9 307 3 DDB_G0280307 Beta-lactamase-like protein 2 Dictyostelium discoideum
P85302 2.63e-13 74 20 8 379 1 ampC Beta-lactamase Pseudomonas fluorescens
Q48434 2.92e-12 71 23 11 350 1 blaCMY-2 Beta-lactamase CMY-2 Klebsiella pneumoniae
O53044 4.02e-12 70 23 11 350 3 blaCMY-4 Beta-lactamase CMY-4 Klebsiella pneumoniae
P05193 6.39e-12 70 22 9 350 1 ampC Beta-lactamase Citrobacter freundii
Q6G6M9 3.52e-10 65 23 12 338 3 flp Protein flp Staphylococcus aureus (strain MSSA476)
P32959 6.53e-10 64 26 13 340 1 pbpE Penicillin-binding protein 4* Bacillus subtilis (strain 168)
Q8NUZ4 9.95e-10 63 23 12 338 3 flp Protein flp Staphylococcus aureus (strain MW2)
A6WYS5 1e-09 63 27 16 298 3 dap D-aminopeptidase Brucella anthropi (strain ATCC 49188 / DSM 6882 / CCUG 24695 / JCM 21032 / LMG 3331 / NBRC 15819 / NCTC 12168 / Alc 37)
P94958 1.28e-09 63 23 13 381 3 ampC Beta-lactamase Morganella morganii
Q6GDZ1 3.33e-09 62 22 12 338 3 flp Protein flp Staphylococcus aureus (strain MRSA252)
Q7A3Q5 4.15e-09 62 22 12 338 1 flp Protein flp Staphylococcus aureus (strain N315)
Q99RJ0 4.15e-09 62 22 12 338 3 flp Protein flp Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q54SB6 6.9e-09 61 25 12 313 3 DDB_G0282555 Beta-lactamase-like protein 3 Dictyostelium discoideum
Q5HDB2 2.23e-08 59 22 12 338 4 flp Protein flp Staphylococcus aureus (strain COL)
Q9KJ74 5.32e-08 58 22 12 338 4 flp Protein flp Staphylococcus aureus
Q2FVH6 5.32e-08 58 22 12 338 4 flp Protein flp Staphylococcus aureus (strain NCTC 8325 / PS 47)
P00811 6.93e-08 57 23 11 348 1 ampC Beta-lactamase Escherichia coli (strain K12)
O31773 7.16e-08 57 23 10 298 2 pbpX Putative penicillin-binding protein PbpX Bacillus subtilis (strain 168)
O69773 9.51e-08 57 23 10 364 3 ampC Beta-lactamase Providencia stuartii
A5VVL2 1.06e-07 57 25 12 277 3 dap D-aminopeptidase Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)
P45460 1.53e-07 56 22 13 355 3 ampC Beta-lactamase Yersinia enterocolitica
Q9ZBA9 1.93e-07 56 26 14 276 1 dap D-aminopeptidase Brucella anthropi
Q5FRJ7 2.07e-07 56 25 4 228 3 dap D-aminopeptidase Gluconobacter oxydans (strain 621H)
P18539 3.18e-07 55 22 9 348 3 ampC Beta-lactamase Serratia marcescens
A0A3B1EFQ0 5.71e-07 54 27 7 172 1 str5 Beta-lactamase-like protein str5 Strobilurus tenacellus
C0RM93 1.15e-06 54 25 11 262 3 dap D-aminopeptidase Brucella melitensis biotype 2 (strain ATCC 23457)
Q8FV99 1.16e-06 54 25 11 262 3 dap D-aminopeptidase Brucella suis biovar 1 (strain 1330)
A9WVV8 1.16e-06 54 25 11 262 3 dap D-aminopeptidase Brucella suis (strain ATCC 23445 / NCTC 10510)
A9MCM7 1.16e-06 54 25 11 262 3 dap D-aminopeptidase Brucella canis (strain ATCC 23365 / NCTC 10854 / RM-666)
Q579G4 1.16e-06 54 25 11 262 3 dap D-aminopeptidase Brucella abortus biovar 1 (strain 9-941)
Q2YLB4 1.16e-06 54 25 11 262 3 dap D-aminopeptidase Brucella abortus (strain 2308)
B2SD81 1.16e-06 54 25 11 262 3 dap D-aminopeptidase Brucella abortus (strain S19)
Q8YD27 1.24e-06 54 25 11 262 3 dap D-aminopeptidase Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P05364 1.38e-05 50 23 9 332 1 ampC Beta-lactamase Enterobacter cloacae
A3PRU3 2.16e-05 50 22 6 250 3 dap D-aminopeptidase Cereibacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)
A0A2I1D2N1 3.1e-05 49 23 18 373 3 ungD' Unguisins hydrolase ungD' Aspergillus campestris (strain IBT 28561)
B9KTA6 3.44e-05 49 22 6 250 3 dap D-aminopeptidase Cereibacter sphaeroides (strain KD131 / KCTC 12085)
Q54SB5 4.22e-05 49 25 11 311 3 DDB_G0282557 Beta-lactamase-like protein 4 Dictyostelium discoideum
Q5HH27 5.8e-05 48 18 8 317 2 fmtA Teichoic acid D-alanine hydrolase Staphylococcus aureus (strain COL)
Q2FZK3 5.8e-05 48 18 8 317 2 fmtA Teichoic acid D-alanine hydrolase Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q7A185 6.06e-05 48 18 8 317 3 fmtA Teichoic acid D-alanine hydrolase Staphylococcus aureus (strain MW2)
O50608 6.06e-05 48 18 8 317 1 fmtA Teichoic acid D-alanine hydrolase Staphylococcus aureus
Q6GAF6 6.06e-05 48 18 8 317 3 fmtA Teichoic acid D-alanine hydrolase Staphylococcus aureus (strain MSSA476)
Q7A6A2 6.06e-05 48 18 8 317 1 fmtA Teichoic acid D-alanine hydrolase Staphylococcus aureus (strain N315)
Q7A2T0 6.06e-05 48 18 8 317 1 fmtA Teichoic acid D-alanine hydrolase Staphylococcus aureus (strain Mu50 / ATCC 700699)
P9WLZ3 6.55e-05 48 24 12 301 1 Rv1367c Protein Rv1367c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WLZ2 6.55e-05 48 24 12 301 4 MT1414 Uncharacterized protein MT1414 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q6GI27 0.000105 47 20 4 249 3 fmtA Teichoic acid D-alanine hydrolase Staphylococcus aureus (strain MRSA252)
Q8XBJ0 0.000229 47 25 4 169 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Escherichia coli O157:H7
Q7KWX1 0.000297 46 27 5 159 3 DDB_G0276787 Beta-lactamase-like protein 1 Dictyostelium discoideum
P77619 0.000303 46 25 4 169 1 yfeW Putative D-alanyl-D-alanine carboxypeptidase Escherichia coli (strain K12)
D4AXL1 0.000343 46 25 7 178 1 ARB_00930 Beta-lactamase-like protein ARB_00930 Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371)
Q3IX78 0.000406 46 21 6 250 3 dap D-aminopeptidase Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS17280
Feature type CDS
Gene ampH
Product D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH
Location 3795147 - 3796364 (strand: -1)
Length 1218 (nucleotides) / 405 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1434
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00144 Beta-lactamase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1680 Defense mechanisms (V) V CubicO group peptidase, beta-lactamase class C family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18988 serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-] - -

Protein Sequence

MKKHLLKYLLIPIALLTLNACSQRATVTPTLPAKFNQHNVPELSQWPTTLSPKANNSREIFDKYAQQIYQKSNPQGMVIVMINNTQSLNRAFGTTSPDSRQTPSMNSLIRIASITKLMTSEVMLKLQDDGKLLVTDPLQKYSYYGVDIPLVNNQSPIRLYHLATHTSGFPREQPGGKWGRPVFIWPTHGDRWNWLKKASLTTPAGQSASYSNLAYDLLADALVKASGKNYPQLLKQYVTQPAGMRDTTLTPNSTQCQRLLIGYRPSPCSETIAAAGSGGVYSTPADMQRWMQGFLNSNNTMRKATASKEQSIYFPRQRLSSIEGMDVAGRADGIGLGWVYMAPANGVPAIYQKTGGGGGFNTYMATIPELNIGVFVVITRKANGTKFSEVTRGTNALVRALAQSF

Flanking regions ( +/- flanking 50bp)

ATTTATTTTGTTCTCTTTTCTTTCACCTTACTCGTTATGTTGATCATAAAATGAAAAAACATCTCCTAAAATATCTCCTCATTCCTATTGCACTACTTACGCTCAATGCCTGTAGTCAACGAGCAACGGTAACGCCAACGTTACCCGCTAAGTTTAATCAACATAATGTGCCTGAATTGTCACAATGGCCAACCACCTTATCACCAAAGGCGAATAATAGCCGGGAGATTTTTGATAAGTATGCTCAGCAGATTTATCAAAAAAGTAACCCTCAAGGGATGGTGATTGTCATGATTAACAATACGCAATCTCTTAATCGTGCTTTTGGTACTACAAGCCCCGATAGCCGTCAAACCCCGTCAATGAACTCATTAATACGTATTGCTTCTATTACTAAATTAATGACGAGTGAAGTGATGTTAAAATTACAAGATGATGGCAAGTTGTTGGTTACTGATCCTCTGCAAAAATATAGTTATTATGGTGTCGATATTCCATTAGTGAACAATCAATCTCCTATTCGTCTTTATCATTTAGCTACCCATACCAGTGGTTTTCCTCGTGAACAACCCGGCGGAAAATGGGGTAGACCGGTTTTTATTTGGCCAACCCATGGCGATCGCTGGAACTGGCTAAAAAAAGCCTCTTTAACAACACCGGCGGGACAATCTGCCTCTTATTCTAATCTGGCTTATGATTTATTAGCAGATGCATTAGTGAAAGCCTCTGGTAAAAACTATCCTCAACTATTAAAACAGTATGTGACACAACCTGCGGGAATGCGTGATACCACGTTAACGCCAAATAGCACACAATGTCAGCGATTATTAATTGGTTATAGACCCAGCCCTTGTTCTGAGACTATCGCCGCCGCCGGAAGTGGGGGTGTTTATTCTACGCCTGCAGATATGCAACGTTGGATGCAAGGCTTTTTAAACTCAAATAATACGATGAGAAAAGCGACGGCCAGTAAAGAGCAGTCTATTTATTTTCCGCGCCAACGACTATCTTCTATTGAAGGGATGGATGTTGCAGGGCGAGCGGATGGCATTGGCTTAGGATGGGTTTATATGGCGCCTGCCAATGGTGTGCCTGCTATTTACCAAAAAACCGGTGGTGGCGGTGGTTTTAATACCTATATGGCAACCATTCCTGAATTAAATATCGGTGTTTTTGTTGTCATCACCCGTAAAGCTAATGGCACCAAGTTTAGTGAAGTGACTCGAGGTACAAATGCCCTTGTGCGTGCTTTAGCACAAAGTTTTTAAACGAAATAATCAACTTATAGACCGATAAAAAAAGCGCCTTGATTATTGAA