Homologs in group_1432

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08850 FBDBKF_08850 69.6 Morganella morganii S1 lptF LPS export ABC transporter permease LptF
EHELCC_12675 EHELCC_12675 69.6 Morganella morganii S2 lptF LPS export ABC transporter permease LptF
NLDBIP_13015 NLDBIP_13015 69.6 Morganella morganii S4 lptF LPS export ABC transporter permease LptF
LHKJJB_13540 LHKJJB_13540 69.6 Morganella morganii S3 lptF LPS export ABC transporter permease LptF
HKOGLL_11490 HKOGLL_11490 69.6 Morganella morganii S5 lptF LPS export ABC transporter permease LptF
F4V73_RS10065 F4V73_RS10065 68.8 Morganella psychrotolerans lptF LPS export ABC transporter permease LptF

Distribution of the homologs in the orthogroup group_1432

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1432

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFA1 8.35e-153 437 65 0 362 1 lptF Lipopolysaccharide export system permease protein LptF Shigella flexneri
P0AF98 8.35e-153 437 65 0 362 1 lptF Lipopolysaccharide export system permease protein LptF Escherichia coli (strain K12)
P0AF99 8.35e-153 437 65 0 362 3 lptF Lipopolysaccharide export system permease protein LptF Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFA0 8.35e-153 437 65 0 362 3 lptF Lipopolysaccharide export system permease protein LptF Escherichia coli O157:H7
P45333 1.21e-117 348 51 1 366 3 lptF Lipopolysaccharide export system permease protein LptF Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS17270
Feature type CDS
Gene lptF
Product LPS export ABC transporter permease LptF
Location 3792881 - 3793978 (strand: 1)
Length 1098 (nucleotides) / 365 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1432
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF03739 Lipopolysaccharide export system permease LptF/LptG

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0795 Cell wall/membrane/envelope biogenesis (M)
Cell motility (N)		 MN Lipopolysaccharide export LptBFGC system, permease protein LptF

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07091 lipopolysaccharide export system permease protein ABC transporters -

Protein Sequence

MIIIRYLARETLKSQIAILFILMLIFFSQKLVEILGAAVEGNIPTNLVVSLLWLGIPEMAQLILPLSLFLGLLMTYSKLYVESEITVMNACGIGKKALVQAALLLSLLTSVLAAGNVVWLIPWSSVHQEQVLEDAKANPSLAALMEGQFKMSSDRNMVLYLGSVKGNQFQDVFLAQLRPTQNQRPSVVVADKGYTKELPNGNQVVVLSEGTRYEGTAVLRDFRITDFTDYQAVIGHRESTISRNRVEQKTMNELWHSTEPESIAEFHWRLTLIFSVVIMALMVVPLSEVNPRQGRVLSMLPAMLLYLVFFLLQSSLRSSGEKGKVDPLIAMWTVNGIYFALALLLNAWDTLPMRKLRARFKKGVA

Flanking regions ( +/- flanking 50bp)

AAGTTAGCGATTTTCCTGCAAAAAGACAAGTTTTCACAGGCATAACTAGCGTGATTATAATTCGATATTTAGCTCGGGAAACCCTTAAAAGTCAGATAGCCATCTTATTTATCTTGATGCTTATCTTCTTTAGCCAAAAGCTGGTTGAAATTTTAGGGGCTGCTGTAGAAGGTAATATTCCTACAAACCTTGTGGTTTCTCTGCTGTGGCTGGGGATCCCCGAGATGGCACAGCTTATTCTACCATTAAGCCTTTTTCTTGGTCTTCTGATGACTTACAGCAAACTTTATGTTGAAAGTGAGATAACCGTCATGAATGCCTGTGGAATAGGTAAAAAAGCATTAGTGCAAGCAGCACTATTGTTGTCATTACTTACTAGCGTCTTGGCGGCAGGGAATGTGGTGTGGTTGATCCCATGGTCGTCTGTACATCAAGAGCAAGTGCTGGAAGATGCAAAAGCCAATCCAAGCTTAGCGGCATTAATGGAAGGGCAATTTAAAATGTCCAGTGACCGTAATATGGTGCTTTATCTCGGTAGCGTAAAGGGCAACCAATTCCAAGATGTTTTCTTGGCTCAATTGCGTCCAACACAAAACCAACGCCCATCTGTTGTGGTGGCGGATAAAGGGTATACCAAAGAGCTACCAAACGGTAACCAAGTCGTGGTACTTAGCGAGGGTACGCGGTATGAAGGTACGGCGGTACTACGCGATTTTCGTATTACTGATTTTACCGATTACCAAGCGGTGATAGGCCATCGAGAGTCTACTATTAGCCGTAATCGCGTCGAACAAAAAACCATGAATGAGTTGTGGCACTCAACAGAGCCTGAGTCTATCGCTGAATTTCATTGGCGTTTAACCTTAATTTTCTCTGTGGTGATCATGGCGTTAATGGTTGTGCCGTTAAGTGAAGTCAACCCACGTCAAGGGCGAGTGTTAAGTATGTTGCCGGCGATGTTGCTTTATTTGGTGTTTTTCCTATTACAAAGCTCCTTGCGTTCAAGCGGTGAAAAAGGAAAGGTTGACCCACTTATTGCTATGTGGACAGTGAATGGGATTTATTTTGCTTTAGCGCTGTTATTGAATGCGTGGGATACCTTACCAATGCGCAAACTACGTGCTCGCTTTAAGAAAGGAGTTGCCTGATGTTTGGTGTATTAGATAAATATATCGGGCGTACGATTTTGCAATCGATT