COG0795


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0795, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Lipopolysaccharide export LptBFGC system, permease protein LptF
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)
Cell motility (N)

Occurence in the database

COG0795 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1432 FBDBKF_08850 150266 151369 1 lptF LPS export ABC transporter permease LptF Morganella morganii S1
1 group_1433 FBDBKF_08855 151369 152451 1 lptG LPS export ABC transporter permease LptG Morganella morganii S1
2 group_1433 EHELCC_12670 11274 12356 -1 lptG LPS export ABC transporter permease LptG Morganella morganii S2
3 group_1432 EHELCC_12675 12356 13459 -1 lptF LPS export ABC transporter permease LptF Morganella morganii S2
4 group_1433 NLDBIP_13010 11274 12356 -1 lptG LPS export ABC transporter permease LptG Morganella morganii S4
5 group_1432 NLDBIP_13015 12356 13459 -1 lptF LPS export ABC transporter permease LptF Morganella morganii S4
6 group_1432 LHKJJB_13540 148984 150087 1 lptF LPS export ABC transporter permease LptF Morganella morganii S3
7 group_1433 LHKJJB_13545 150087 151169 1 lptG LPS export ABC transporter permease LptG Morganella morganii S3
8 group_1433 HKOGLL_11485 11274 12356 -1 lptG LPS export ABC transporter permease LptG Morganella morganii S5
9 group_1432 HKOGLL_11490 12356 13459 -1 lptF LPS export ABC transporter permease LptF Morganella morganii S5
10 group_1432 F4V73_RS10065 120738 121841 1 lptF LPS export ABC transporter permease LptF Morganella psychrotolerans
11 group_1433 F4V73_RS10070 121841 122923 1 lptG LPS export ABC transporter permease LptG Morganella psychrotolerans
12 group_1432 PMI_RS17270 3792881 3793978 1 lptF LPS export ABC transporter permease LptF Proteus mirabilis HI4320
13 group_1433 PMI_RS17275 3793978 3795057 1 lptG LPS export ABC transporter permease LptG Proteus mirabilis HI4320