Homologs in group_1423

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08785 FBDBKF_08785 86.0 Morganella morganii S1 nrdD anaerobic ribonucleoside-triphosphate reductase
EHELCC_12740 EHELCC_12740 86.0 Morganella morganii S2 nrdD anaerobic ribonucleoside-triphosphate reductase
NLDBIP_13080 NLDBIP_13080 86.0 Morganella morganii S4 nrdD anaerobic ribonucleoside-triphosphate reductase
LHKJJB_13475 LHKJJB_13475 86.0 Morganella morganii S3 nrdD anaerobic ribonucleoside-triphosphate reductase
HKOGLL_11555 HKOGLL_11555 86.0 Morganella morganii S5 nrdD anaerobic ribonucleoside-triphosphate reductase
F4V73_RS10000 F4V73_RS10000 85.1 Morganella psychrotolerans nrdD anaerobic ribonucleoside-triphosphate reductase

Distribution of the homologs in the orthogroup group_1423

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1423

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9L646 0.0 1268 83 2 713 3 nrdD Anaerobic ribonucleoside-triphosphate reductase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P28903 0.0 1266 83 2 713 1 nrdD Anaerobic ribonucleoside-triphosphate reductase Escherichia coli (strain K12)
P43752 0.0 1145 76 3 704 3 nrdD Anaerobic ribonucleoside-triphosphate reductase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P07071 0.0 691 53 6 615 1 nrdD Anaerobic ribonucleoside-triphosphate reductase Enterobacteria phage T4
Q58242 8.37e-15 82 27 10 267 4 MJ0832 Uncharacterized protein MJ0832 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58242 2.29e-07 58 25 10 241 4 MJ0832 Uncharacterized protein MJ0832 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58242 0.000104 49 26 6 164 4 MJ0832 Uncharacterized protein MJ0832 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P9WH76 7.06e-08 59 35 1 112 2 nrdZ Vitamin B12-dependent ribonucleoside-diphosphate reductase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P9WH77 7.45e-08 59 35 1 113 1 nrdZ Vitamin B12-dependent ribonucleoside-diphosphate reductase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
E7FHX6 3.33e-07 57 37 1 97 1 rnr Vitamin B12-dependent ribonucleoside-diphosphate reductase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q9HI70 2.28e-06 54 28 3 150 1 Ta1475 Vitamin B12-dependent ribonucleoside-diphosphate reductase Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
Q9PL93 2.79e-05 51 31 1 112 3 nrdA Ribonucleoside-diphosphate reductase subunit alpha Chlamydia muridarum (strain MoPn / Nigg)
Q9PL93 0.000132 49 31 5 144 3 nrdA Ribonucleoside-diphosphate reductase subunit alpha Chlamydia muridarum (strain MoPn / Nigg)
O84834 6.71e-05 50 30 1 112 3 nrdA Ribonucleoside-diphosphate reductase subunit alpha Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9Z6S5 0.000249 48 33 3 112 3 nrdA Ribonucleoside-diphosphate reductase subunit alpha Chlamydia pneumoniae
Q9Z6S5 0.001 46 34 3 91 3 nrdA Ribonucleoside-diphosphate reductase subunit alpha Chlamydia pneumoniae

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS17200
Feature type CDS
Gene nrdD
Product anaerobic ribonucleoside-triphosphate reductase
Location 3778307 - 3780445 (strand: -1)
Length 2139 (nucleotides) / 712 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1423
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF03477 ATP cone domain
PF13597 Anaerobic ribonucleoside-triphosphate reductase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1328 Nucleotide transport and metabolism (F) F Anaerobic ribonucleoside-triphosphate reductase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K21636 ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] Purine metabolism
Pyrimidine metabolism
Metabolic pathways
Nucleotide metabolism		 -

Protein Sequence

MKTIVIKRDGCKVSFDQTRISDAIKRAAEACQITDDDYCEFVAQSVSQSLAGRSNVDIREIQDAVENQLMAGEHKDIARAYIEYRHDRDVAREQRGRLTQEIRGLIEQSDVSILHENANKDSKVIPTQRDLLAGIVAKHYAKLHILPRDVVLAHERGEIHYHDLDYSPFFPMFNCMLIDLNGMLTNGFKMGNAEIEQPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVKASYDKHYKVAQEWQIADKEAYANARTEKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSKEARLIQRSILENRMAGLGKNRKTAVFPKLVFAIKDGLNHKFGDPNYDIKQLALECASKRMYPDILNYDQVVKVTGSFKTPMGCRSFLGVYEENGEMLHEGRNNLGVISLNLPRIAIEAKGDEAAFWSLLDKRLELAKKALMTRIARLENVKARVAPILYMEGACGVRLKADDSVAEIFKHGRASISLGYIGVHETINALFGTQKHVFDDETLRAKAIAIIQRLREATDQWKAETGYGFSLYSTPSENLCDRFCRLDAAEFGIIPGVTDKGYYTNSFHLDVEKKVNPYDKLDFEAPYPPLANGGFICYGEYPNLQHNLKALEDVWDYSYTRVPYYGTNTPIDECYDCGYTGEFSCTSKGFTCPRCGNHNPARVSVIRRVCGYLGSPDSRPFNAGKQEEVKRRVKHLANGQLG

Flanking regions ( +/- flanking 50bp)

CTGTTTTTATGGGATTAGAGCCTGTGGATAAATAGTTAAGGAGCCAGATTGTGAAAACCATAGTGATAAAACGAGACGGATGTAAAGTCTCTTTTGACCAAACCCGCATCAGCGATGCTATCAAAAGAGCAGCCGAAGCTTGTCAGATCACTGATGATGATTATTGTGAGTTTGTCGCTCAATCTGTTTCACAATCTCTCGCAGGACGTTCGAATGTCGATATCCGTGAGATCCAAGACGCCGTTGAAAATCAGCTGATGGCTGGCGAGCACAAAGATATTGCCAGAGCTTATATTGAATACCGTCATGACCGAGATGTTGCTCGTGAGCAACGAGGACGATTAACTCAGGAAATCCGCGGTCTTATCGAACAGAGTGATGTCTCTATCTTGCACGAGAATGCGAATAAAGACAGTAAAGTTATCCCAACCCAACGCGATTTACTTGCGGGAATTGTGGCTAAACATTACGCAAAATTACATATCCTGCCAAGAGATGTGGTACTCGCTCATGAGCGCGGTGAAATTCATTATCATGATCTCGATTACTCACCCTTTTTCCCTATGTTTAACTGCATGCTGATTGATCTCAATGGTATGTTAACCAACGGTTTCAAGATGGGTAATGCAGAAATAGAACAGCCAAAATCCATTTCAACAGCCACTGCGGTGACTGCACAGATTATTGCTCAAGTCGCTAGTCATATTTATGGTGGCACGACAATCAACCGTATTGATGAAGTCCTTGCACCTTTTGTCAAAGCCAGTTACGACAAACACTATAAAGTGGCGCAAGAATGGCAAATAGCGGATAAAGAAGCTTATGCCAACGCACGTACAGAAAAAGAGTGTTATGACGCTTTTCAATCTTTAGAATATGAAGTTAACACTCTACATACGGCTAATGGTCAAACGCCTTTTGTGACCTTTGGCTTTGGCCTAGGCACATCAAAAGAAGCACGTTTAATTCAACGCTCAATCCTTGAAAATCGCATGGCGGGTTTAGGTAAAAACCGCAAAACGGCGGTTTTCCCCAAACTGGTTTTTGCTATTAAAGATGGCTTAAACCATAAATTTGGTGATCCTAACTACGACATCAAACAACTTGCTTTAGAATGTGCAAGCAAGCGGATGTACCCTGATATTTTAAATTACGATCAAGTGGTAAAAGTAACCGGCTCGTTTAAAACCCCAATGGGTTGTCGTAGCTTCTTAGGCGTCTATGAAGAAAATGGCGAGATGCTCCACGAAGGGCGCAATAACCTAGGGGTGATCAGTTTAAACTTACCACGCATTGCCATTGAGGCCAAAGGAGATGAAGCCGCATTCTGGTCGCTGCTTGATAAACGTCTTGAATTGGCTAAAAAAGCCTTAATGACCCGAATTGCTCGTTTAGAAAACGTCAAAGCACGTGTTGCCCCTATTCTTTATATGGAAGGTGCTTGTGGCGTACGTTTAAAAGCGGATGACAGTGTTGCTGAAATTTTTAAACATGGCCGGGCCTCCATTTCATTAGGTTATATCGGTGTTCATGAAACGATTAATGCCTTATTTGGTACGCAAAAACACGTCTTTGATGATGAAACATTGAGAGCTAAAGCAATAGCAATTATTCAGCGTTTACGTGAAGCTACAGATCAATGGAAAGCAGAAACAGGCTATGGTTTTAGTCTTTACAGTACACCTAGTGAAAACTTATGTGACCGTTTTTGCCGTTTAGATGCAGCGGAATTCGGTATTATACCGGGGGTGACTGATAAAGGTTATTACACCAACAGTTTCCACTTAGATGTAGAGAAAAAAGTCAATCCATATGATAAGTTGGATTTTGAAGCCCCTTACCCGCCATTAGCCAATGGTGGTTTCATATGCTATGGCGAATATCCAAACTTACAACATAACCTAAAAGCATTAGAAGACGTTTGGGATTATAGCTACACCCGTGTCCCTTACTACGGCACAAACACCCCTATTGATGAATGTTATGACTGTGGTTATACCGGCGAATTTTCTTGTACCAGTAAAGGTTTTACCTGCCCTCGATGCGGTAATCACAACCCTGCAAGAGTCTCGGTGATACGCCGTGTATGTGGCTATTTAGGCAGTCCTGATTCGCGTCCATTTAATGCCGGTAAACAAGAAGAAGTTAAACGTCGAGTTAAACATCTGGCTAATGGTCAGTTAGGTTAATACTGTGAATTACCATCAATATTACCCTGTTGATGTTGTCAATGGCCCAG