Homologs in group_1394

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08610 FBDBKF_08610 63.0 Morganella morganii S1 dacB serine-type D-Ala-D-Ala carboxypeptidase
EHELCC_12915 EHELCC_12915 63.0 Morganella morganii S2 dacB serine-type D-Ala-D-Ala carboxypeptidase
NLDBIP_13255 NLDBIP_13255 63.0 Morganella morganii S4 dacB serine-type D-Ala-D-Ala carboxypeptidase
LHKJJB_13300 LHKJJB_13300 63.0 Morganella morganii S3 dacB serine-type D-Ala-D-Ala carboxypeptidase
HKOGLL_11730 HKOGLL_11730 63.0 Morganella morganii S5 dacB serine-type D-Ala-D-Ala carboxypeptidase
F4V73_RS09835 F4V73_RS09835 64.1 Morganella psychrotolerans dacB serine-type D-Ala-D-Ala carboxypeptidase

Distribution of the homologs in the orthogroup group_1394

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1394

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P24228 0.0 616 61 2 473 1 dacB D-alanyl-D-alanine carboxypeptidase DacB Escherichia coli (strain K12)
P45161 6.76e-137 405 44 4 465 1 dacB D-alanyl-D-alanine carboxypeptidase DacB Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P39844 1.59e-38 149 31 9 395 1 dacC D-alanyl-D-alanine carboxypeptidase DacC Bacillus subtilis (strain 168)
P39045 2.31e-33 135 31 11 411 1 dac D-alanyl-D-alanine carboxypeptidase Actinomadura sp. (strain R39)
Q86I79 1.05e-19 95 25 14 450 3 pscA Penicillin-sensitive carboxypeptidase A Dictyostelium discoideum
A0R596 4.28e-15 80 36 5 174 3 dacB Carboxypeptidase DacB Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
O06380 2.58e-14 78 27 13 417 1 Rv3627c Carboxypeptidase Rv3627c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS16965
Feature type CDS
Gene dacB
Product serine-type D-Ala-D-Ala carboxypeptidase
Location 3733926 - 3735368 (strand: -1)
Length 1443 (nucleotides) / 480 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1394
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2027 Cell wall/membrane/envelope biogenesis (M) M D-alanyl-D-alanine carboxypeptidase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07259 serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] Peptidoglycan biosynthesis
Metabolic pathways		 -

Protein Sequence

MRLLPIFRGIFYTLSLLSFSTLAIPVEKYIELLPDGTQVGLITQTVGASSPNLTYNDNQLSLPASTQKVVTALAALLQLGGDYQFTTTMETEGKIKNNQLEGDLIFRFSGDPTLTRQQLRAMVAVLKQSGVTKITGNLLIDTSAFSSHDKAPGWVWNDMTQCFSAPPSAAIVDKNCFSVLLQSGQKEGDIATIRKASFYPVTVLSEVETYEKGSTRTRFCELDVTVRDLNTYVITGCIPKREEAMPLMFSIQDGAHWAGILLKEELQRADIELDGYVKRRSQPKASVTVLAQTQSKPLHTLLTTMLKESDNMIADAVFRTIGREYYGVAGTWRSGADATRAILKQKAGIDLANTIMVDGSGLSRHNLIAPATMMQVLQYVGQHDSELNFISMLPLAGHDGTLQYRGGFTEAGVNGKVSAKTGSLKGVYNLAGFMTTANGQKVAFVQFISAYSPPTQNRNAGRAYLVRFETNLYKDIYNNR

Flanking regions ( +/- flanking 50bp)

CTGGCAATCAACACTATAGCGTTAAGCTTATAGTTACGGATAGAGAAATTATGCGCTTATTACCTATATTCCGCGGAATATTTTATACCTTGAGTCTGTTAAGCTTTTCAACCCTCGCCATTCCTGTTGAAAAATATATAGAACTTTTGCCTGATGGCACTCAAGTCGGTTTAATCACCCAAACTGTTGGCGCATCCTCCCCTAACCTAACTTATAATGATAATCAATTATCTTTGCCAGCCAGCACACAAAAAGTGGTCACAGCTTTAGCCGCCCTATTGCAATTAGGGGGCGATTATCAATTTACCACCACAATGGAAACGGAAGGTAAGATAAAAAACAATCAACTAGAGGGTGATTTAATTTTCCGTTTTAGTGGTGATCCTACGCTAACTCGCCAGCAATTACGAGCAATGGTTGCCGTATTAAAACAATCCGGCGTCACAAAAATAACGGGAAATTTATTAATTGATACCTCTGCTTTCTCCAGCCATGACAAAGCGCCGGGATGGGTTTGGAATGATATGACCCAATGCTTTAGTGCCCCACCAAGTGCCGCTATTGTAGATAAAAATTGTTTTTCCGTCTTACTGCAAAGTGGTCAAAAAGAAGGTGATATCGCCACCATACGTAAAGCGTCTTTTTATCCTGTCACGGTTTTAAGCGAAGTTGAAACCTATGAAAAAGGCTCAACACGAACCCGCTTTTGCGAATTAGACGTCACGGTGAGAGATTTAAATACTTATGTGATAACAGGCTGCATTCCTAAACGTGAAGAAGCCATGCCGCTGATGTTTTCCATTCAAGATGGTGCGCACTGGGCAGGTATATTGCTAAAAGAAGAGTTACAACGTGCAGATATTGAGCTGGACGGTTATGTCAAACGCCGCTCCCAACCTAAAGCCTCTGTTACTGTTTTAGCACAAACACAATCTAAACCGTTACACACTTTATTGACGACGATGTTAAAAGAGTCTGACAATATGATTGCAGATGCCGTATTTAGAACTATTGGTCGTGAATATTATGGTGTTGCTGGCACTTGGCGTTCAGGGGCGGATGCCACTCGTGCTATTTTAAAACAAAAAGCGGGCATTGATTTAGCTAATACAATTATGGTGGATGGATCTGGGCTTTCCCGCCATAACCTGATAGCCCCCGCAACCATGATGCAAGTATTACAATATGTCGGACAACATGATAGTGAGTTAAATTTTATCAGTATGCTTCCTCTTGCTGGTCATGATGGTACATTGCAATATCGTGGTGGTTTTACTGAAGCGGGCGTCAACGGTAAAGTTTCCGCTAAAACAGGTTCACTCAAGGGAGTGTATAATCTAGCTGGCTTTATGACCACAGCCAATGGACAGAAAGTAGCATTTGTACAATTTATTTCTGCCTACTCTCCGCCTACACAAAATCGCAATGCTGGACGCGCCTATTTGGTTCGTTTTGAAACGAATTTATATAAAGATATCTATAACAATAGATAGCACTATTATTTGTTAGAAAGTAAAAACGCCTGAAAATTCAGGCGTTTTTT