Homologs in group_1450

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08610 FBDBKF_08610 91.2 Morganella morganii S1 dacB serine-type D-Ala-D-Ala carboxypeptidase
EHELCC_12915 EHELCC_12915 91.2 Morganella morganii S2 dacB serine-type D-Ala-D-Ala carboxypeptidase
NLDBIP_13255 NLDBIP_13255 91.2 Morganella morganii S4 dacB serine-type D-Ala-D-Ala carboxypeptidase
LHKJJB_13300 LHKJJB_13300 91.2 Morganella morganii S3 dacB serine-type D-Ala-D-Ala carboxypeptidase
HKOGLL_11730 HKOGLL_11730 91.2 Morganella morganii S5 dacB serine-type D-Ala-D-Ala carboxypeptidase
PMI_RS16965 PMI_RS16965 64.1 Proteus mirabilis HI4320 dacB serine-type D-Ala-D-Ala carboxypeptidase

Distribution of the homologs in the orthogroup group_1450

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1450

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P24228 0.0 696 67 1 476 1 dacB D-alanyl-D-alanine carboxypeptidase DacB Escherichia coli (strain K12)
P45161 5.29e-150 439 46 3 453 1 dacB D-alanyl-D-alanine carboxypeptidase DacB Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P39844 6.16e-32 131 28 8 405 1 dacC D-alanyl-D-alanine carboxypeptidase DacC Bacillus subtilis (strain 168)
P39045 1.28e-31 130 29 14 434 1 dac D-alanyl-D-alanine carboxypeptidase Actinomadura sp. (strain R39)
A0R596 1.71e-16 85 36 5 172 3 dacB Carboxypeptidase DacB Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
O06380 9.79e-14 76 36 5 169 1 Rv3627c Carboxypeptidase Rv3627c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Q86I79 1.22e-12 73 23 12 412 3 pscA Penicillin-sensitive carboxypeptidase A Dictyostelium discoideum

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09835
Feature type CDS
Gene dacB
Product serine-type D-Ala-D-Ala carboxypeptidase
Location 70633 - 72075 (strand: -1)
Length 1443 (nucleotides) / 480 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000002
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1450
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2027 Cell wall/membrane/envelope biogenesis (M) M D-alanyl-D-alanine carboxypeptidase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07259 serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] Peptidoglycan biosynthesis
Metabolic pathways		 -

Protein Sequence

MNFFTRTAYAMGLSVLLTGNAPATPVEQYTQYLPAGTNLALIAQRVGDSQPIVEYQGQQMAMPASTQKVVTALAALLQLGSDFRFITTLETKGQLNGNILQGDLITRFTGDPTLTRQQIRNMVNELRKAGVQTIQGDLVIDISAYASHDKAPGWVWNDLTQCFSAPPGAAIIDRNCFSVTLYPGANPGDIATIRTASYYPVTMFSEVKTLERGSAEARFCELDVVPGELNRYTVTGCMNQRSEPLPLAFGVQNGASYAGAIVKNELIQAGITLSGNVRRQTHPDQPGTVLAQAQSVPLHDLLTKMLKKSDNMIADEVFRTIGRSYYGVPGTWRSGQEAVRHILKEKAGIDMGNTVMVDGSGLSRHNLITPATMMDALQFIAKHDDQLQFIKMLPLSGYDGTLQYRGGLTEAGVNGKLSAKTGSLQGVYNLAGFLTTASGQRIAFVQFISAYAVPPAQQRSRRVPLVRFEGHLYKDLYRNY

Flanking regions ( +/- flanking 50bp)

GCTTTAGTATAACGGCTTCTCAACCCGGATTGTGATGGATAGGTCGCTCAATGAACTTTTTTACCCGGACCGCTTATGCGATGGGATTGTCTGTATTACTTACCGGTAACGCGCCCGCCACCCCGGTTGAACAATATACCCAATATCTGCCGGCAGGTACAAACCTGGCTCTGATCGCGCAGCGCGTGGGGGATTCACAACCTATTGTCGAGTATCAGGGTCAGCAAATGGCAATGCCTGCCAGCACCCAGAAAGTGGTCACTGCGCTTGCCGCCCTCCTGCAACTTGGGTCGGATTTCCGTTTTATCACGACCCTGGAAACCAAAGGACAGCTGAACGGTAATATATTACAAGGGGATTTAATCACCCGTTTTACCGGGGACCCGACGCTGACCCGCCAGCAGATCCGCAATATGGTCAATGAGCTGCGTAAAGCGGGTGTACAGACTATTCAGGGCGATCTGGTGATTGATATCTCTGCGTACGCCAGCCATGACAAAGCACCGGGCTGGGTGTGGAATGACCTGACACAATGCTTCAGCGCCCCGCCGGGTGCAGCAATTATTGACCGCAACTGCTTTTCAGTCACTCTCTATCCCGGCGCAAATCCCGGTGATATCGCGACTATCCGCACGGCAAGTTACTATCCTGTCACCATGTTCAGTGAAGTGAAAACTCTGGAGCGCGGTTCTGCTGAGGCCCGCTTTTGCGAGCTGGATGTCGTGCCGGGCGAACTGAACCGCTATACCGTCACCGGCTGTATGAATCAGCGCAGTGAACCTCTGCCGCTGGCCTTTGGTGTGCAAAACGGCGCAAGTTATGCCGGCGCGATAGTGAAAAACGAGCTGATACAGGCGGGGATCACACTGAGCGGCAATGTCCGCCGTCAGACACATCCGGATCAACCCGGCACCGTGCTGGCACAGGCACAATCCGTACCACTGCATGACCTGCTGACAAAAATGCTGAAAAAATCCGATAATATGATTGCCGATGAAGTTTTCCGGACAATCGGTCGCAGTTATTATGGTGTGCCGGGCACCTGGCGCTCAGGTCAGGAGGCTGTACGCCATATCCTGAAAGAGAAAGCAGGGATCGACATGGGCAATACGGTGATGGTTGATGGCTCCGGATTATCACGCCATAACCTGATAACACCGGCAACAATGATGGATGCGCTGCAATTCATAGCCAAACATGATGATCAGCTGCAATTTATTAAAATGCTTCCGCTGTCAGGTTATGACGGAACGCTGCAATACCGGGGCGGTCTGACAGAAGCGGGGGTAAACGGCAAGCTTTCTGCCAAAACAGGCTCCTTACAGGGCGTTTATAATCTGGCAGGGTTCCTGACTACCGCCAGCGGACAGCGTATTGCATTCGTGCAATTTATCTCGGCTTATGCCGTTCCGCCTGCTCAGCAGCGCAGCCGTCGTGTACCGCTGGTCCGGTTTGAAGGTCATTTGTATAAAGATCTCTATCGTAACTATTAATCGTAGCCTGCCTATAACAAGTCTCCCTGCATTATCAGGGAGACTTAATA