Orthogroup:group_1394



Homologs in group_1394

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08610 FBDBKF_08610 Morganella morganii S1 dacB serine-type D-Ala-D-Ala carboxypeptidase
EHELCC_12915 EHELCC_12915 Morganella morganii S2 dacB serine-type D-Ala-D-Ala carboxypeptidase
NLDBIP_13255 NLDBIP_13255 Morganella morganii S4 dacB serine-type D-Ala-D-Ala carboxypeptidase
LHKJJB_13300 LHKJJB_13300 Morganella morganii S3 dacB serine-type D-Ala-D-Ala carboxypeptidase
HKOGLL_11730 HKOGLL_11730 Morganella morganii S5 dacB serine-type D-Ala-D-Ala carboxypeptidase
F4V73_RS09835 F4V73_RS09835 Morganella psychrotolerans dacB serine-type D-Ala-D-Ala carboxypeptidase
PMI_RS16965 PMI_RS16965 Proteus mirabilis HI4320 dacB serine-type D-Ala-D-Ala carboxypeptidase

Distribution of group_1394 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1394 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1394

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1394.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 dacB 7

Product

# Product Occurence
1 serine-type D-Ala-D-Ala carboxypeptidase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2027 7 M Cell wall/membrane/envelope biogenesis (M) D-alanyl-D-alanine carboxypeptidase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07259 7 serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] Peptidoglycan biosynthesis
Metabolic pathways
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Pfam domain Annotation(s)

Domain ID Occurences Description
PF02113 7 D-Ala-D-Ala carboxypeptidase 3 (S13) family

Annotations of the 7 SwissProt hits

Annotation Number of occurrences
Carboxypeptidase DacB 1
Carboxypeptidase Rv3627c 1
D-alanyl-D-alanine carboxypeptidase 1
D-alanyl-D-alanine carboxypeptidase DacB 2
D-alanyl-D-alanine carboxypeptidase DacC 1
Penicillin-sensitive carboxypeptidase A 1

Protein length

Unique protein length 480

Protein length distribution