Homologs in group_1317

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08150 FBDBKF_08150 78.6 Morganella morganii S1 yifE UPF0438 protein YifE
EHELCC_13380 EHELCC_13380 78.6 Morganella morganii S2 yifE UPF0438 protein YifE
NLDBIP_13715 NLDBIP_13715 78.6 Morganella morganii S4 yifE UPF0438 protein YifE
LHKJJB_12840 LHKJJB_12840 78.6 Morganella morganii S3 yifE UPF0438 protein YifE
HKOGLL_12190 HKOGLL_12190 78.6 Morganella morganii S5 yifE UPF0438 protein YifE
F4V73_RS18675 F4V73_RS18675 75.9 Morganella psychrotolerans - DUF413 domain-containing protein

Distribution of the homologs in the orthogroup group_1317

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1317

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ADN5 6.93e-66 197 80 0 112 3 yifE UPF0438 protein YifE Shigella flexneri
P0ADN2 6.93e-66 197 80 0 112 1 yifE UPF0438 protein YifE Escherichia coli (strain K12)
P0ADN3 6.93e-66 197 80 0 112 3 yifE UPF0438 protein YifE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ADN4 6.93e-66 197 80 0 112 3 yifE UPF0438 protein YifE Escherichia coli O157:H7
Q7CPD8 3.09e-64 192 77 0 112 3 yifE UPF0438 protein YifE Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9L6T3 3.09e-64 192 77 0 112 3 yifE UPF0438 protein YifE Salmonella typhi
Q5PJY9 3.09e-64 192 77 0 112 3 yifE UPF0438 protein YifE Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q57HV1 3.09e-64 192 77 0 112 3 yifE UPF0438 protein YifE Salmonella choleraesuis (strain SC-B67)
P31811 1.03e-41 136 67 0 95 1 HI_0847 UPF0438 protein HI_0847 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS16385
Feature type CDS
Gene -
Product DUF413 domain-containing protein
Location 3613353 - 3613691 (strand: 1)
Length 339 (nucleotides) / 112 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1317
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04219 Protein of unknown function, DUF

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3085 Function unknown (S) S Uncharacterized conserved protein YifE, UPF0438 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09897 uncharacterized protein - -

Protein Sequence

MAESFITTNRFFDNKHYPRGFSRHGDFTIKEAQILERHGQAFNELDLGKREPATEAEKLFVAMCRGEREAATVEEKIWKKYTSRISRPKRFHTLSGGKPQLDPSDDYTDSDD

Flanking regions ( +/- flanking 50bp)

CTAATACTCCGCGCCATAAGTATGACGATAGAGAATTAGGAGTGTGTCAGATGGCAGAAAGTTTTATCACGACTAATCGTTTTTTTGACAATAAACATTATCCGCGTGGTTTTTCTCGTCATGGCGATTTCACTATCAAGGAAGCCCAGATATTGGAACGTCATGGTCAAGCTTTCAATGAACTTGATTTAGGCAAACGAGAGCCTGCAACTGAAGCGGAAAAATTATTTGTTGCCATGTGTCGTGGCGAACGAGAAGCAGCTACTGTTGAAGAAAAAATTTGGAAGAAATATACCAGTCGTATAAGTCGTCCAAAACGTTTTCATACCTTATCGGGTGGAAAGCCACAGCTCGATCCATCTGATGACTATACCGATTCTGATGATTAATATCATTAGTTTTAATTTAAAAGGGGCGTATTTCGCTCCTTTTTTACTTA